Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES00222 | Sorghum | cytosol, nucleus, plastid | 64.82 | 87.76 |
| Os01t0173100-01 | Rice | nucleus | 54.77 | 71.71 |
| TraesCS3B01G148300.1 | Wheat | cytosol, nucleus, plastid | 53.27 | 69.28 |
| TraesCS3D01G130100.1 | Wheat | cytosol, nucleus, plastid | 52.76 | 67.74 |
| GSMUA_Achr6P05140_001 | Banana | cytosol, nucleus, plastid | 43.72 | 67.44 |
| TraesCS3A01G129200.1 | Wheat | cytosol, nucleus, plastid | 51.76 | 66.45 |
| VIT_09s0002g06460.t01 | Wine grape | cytosol, nucleus, plastid | 42.71 | 65.89 |
| GSMUA_Achr2P17110_001 | Banana | cytosol, nucleus, plasma membrane | 43.22 | 65.65 |
| AT1G29250.1 | Thale cress | cytosol, nucleus, plastid | 42.71 | 65.38 |
| VIT_11s0016g05100.t01 | Wine grape | nucleus | 42.71 | 65.38 |
| GSMUA_Achr6P00670_001 | Banana | nucleus | 41.71 | 65.35 |
| GSMUA_Achr7P08310_001 | Banana | cytosol | 43.22 | 65.15 |
| KRH09747 | Soybean | cytosol, nucleus, plasma membrane | 42.71 | 64.89 |
| CDY50785 | Canola | cytosol, nucleus, plastid | 42.21 | 64.62 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 41.71 | 63.85 |
| Bra032296.1-P | Field mustard | cytosol, nucleus, plastid | 41.71 | 63.85 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 41.21 | 63.57 |
| KRH23562 | Soybean | nucleus | 42.21 | 63.16 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 41.21 | 63.08 |
| Bra005449.1-P | Field mustard | nucleus | 41.21 | 63.08 |
| Bra030127.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 41.21 | 63.08 |
| CDX94654 | Canola | cytosol, endoplasmic reticulum, nucleus | 41.21 | 63.08 |
| CDY63142 | Canola | nucleus | 41.21 | 63.08 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 41.21 | 63.08 |
| CDY17226 | Canola | nucleus | 41.21 | 63.08 |
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 41.21 | 63.08 |
| AT2G34160.1 | Thale cress | cytosol | 40.7 | 62.31 |
| GSMUA_Achr6P05270_001 | Banana | cytosol | 41.71 | 61.94 |
| GSMUA_Achr7P09990_001 | Banana | cytosol | 39.7 | 61.72 |
| CDX90176 | Canola | nucleus | 40.2 | 61.54 |
| Bra010843.1-P | Field mustard | nucleus | 40.2 | 61.54 |
| Zm00001d053625_P001 | Maize | extracellular, plasma membrane | 42.71 | 61.15 |
| Solyc06g068050.2.1 | Tomato | nucleus | 36.68 | 57.48 |
| KRH44436 | Soybean | nucleus | 41.21 | 56.94 |
| PGSC0003DMT400073472 | Potato | cytosol | 36.18 | 56.69 |
| VIT_04s0023g02330.t01 | Wine grape | cytosol | 39.7 | 53.74 |
| KRH47470 | Soybean | nucleus | 35.68 | 51.45 |
| Zm00001d008731_P001 | Maize | nucleus, plasma membrane, vacuole | 53.77 | 44.4 |
| GSMUA_Achr7P10060_001 | Banana | extracellular | 23.12 | 40.35 |
| Zm00001d009798_P001 | Maize | cytosol | 35.68 | 38.59 |
| Zm00001d046401_P001 | Maize | cytosol, nucleus, plasma membrane | 18.59 | 37.0 |
| Zm00001d023639_P002 | Maize | cytosol | 31.66 | 30.88 |
Protein Annotations
| EnsemblPlants:Zm00001d039663_P005 | EnsemblPlants:Zm00001d039663_T005 | EnsemblPlantsGene:Zm00001d039663 | EntrezGene:103649688 | Gene3D:3.30.110.20 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Alba-like_dom_sf |
| InterPro:IPR036882 | PANTHER:PTHR31947 | PANTHER:PTHR31947:SF11 | ProteinID:ONM29615.1 | SEG:seg | SUPFAM:SSF82704 |
| TMHMM:TMhelix | UniParc:UPI0008455354 | UniProt:A0A1D6MK43 | MapMan:15.3.7.2.1 | : | : |
Description
Alba DNA/RNA-binding protein
Coordinates
chr3:+:11198784..11201977
Molecular Weight (calculated)
21800.2 Da
IEP (calculated)
8.712
GRAVY (calculated)
-0.061
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVEEIAEGV KNLTVTGDAA ASGGEGQRRG GGGSSNRIQV SNTKKPLFFY VNLAKVRLTF SPYAPHLSVI LLPTRRFQIL ADLVTSVRAE VYATARRCRA
101: IRSWDGCVPP SPFFLTLFLH IFITAIATVV TVAEILKNNG FAVEKKIRTS TVEINDESRG RPFQKAKIEI ILGKSDKFDE LMAAAAEERG EVEDGEEQA
101: IRSWDGCVPP SPFFLTLFLH IFITAIATVV TVAEILKNNG FAVEKKIRTS TVEINDESRG RPFQKAKIEI ILGKSDKFDE LMAAAAEERG EVEDGEEQA
001: MEEITDGVNN MNLATDSQKK NRIQVSNTKK PLFFYVNLAK RYMQQYNDVE LSALGMAIAT VVTVTEILKN NGFAVEKKIM TSTVDIKDDA RGRPVQKAKI
101: EITLVKSEKF DELMAAANEE KEDAEAQVQN
101: EITLVKSEKF DELMAAANEE KEDAEAQVQN
Arabidopsis Description
Uncharacterized protein At2g34160 [Source:UniProtKB/Swiss-Prot;Acc:O22969]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.