Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G130100.1 | Wheat | cytosol, nucleus, plastid | 95.42 | 94.19 |
| TraesCS3A01G129200.1 | Wheat | cytosol, nucleus, plastid | 92.16 | 90.97 |
| EES00222 | Sorghum | cytosol, nucleus, plastid | 79.74 | 82.99 |
| Os01t0173100-01 | Rice | nucleus | 78.43 | 78.95 |
| GSMUA_Achr6P05140_001 | Banana | cytosol, nucleus, plastid | 63.4 | 75.19 |
| TraesCS7B01G252900.1 | Wheat | cytosol | 62.75 | 72.73 |
| GSMUA_Achr2P17110_001 | Banana | cytosol, nucleus, plasma membrane | 61.44 | 71.76 |
| GSMUA_Achr6P00670_001 | Banana | nucleus | 59.48 | 71.65 |
| AT1G29250.1 | Thale cress | cytosol, nucleus, plastid | 60.78 | 71.54 |
| VIT_11s0016g05100.t01 | Wine grape | nucleus | 60.78 | 71.54 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 60.13 | 71.32 |
| GSMUA_Achr7P08310_001 | Banana | cytosol | 61.44 | 71.21 |
| KRH09747 | Soybean | cytosol, nucleus, plasma membrane | 60.78 | 70.99 |
| KRH23562 | Soybean | nucleus | 61.44 | 70.68 |
| VIT_09s0002g06460.t01 | Wine grape | cytosol, nucleus, plastid | 59.48 | 70.54 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 59.48 | 70.0 |
| Bra030127.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 59.48 | 70.0 |
| CDX94654 | Canola | cytosol, endoplasmic reticulum, nucleus | 59.48 | 70.0 |
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 59.48 | 70.0 |
| TraesCS1B01G135500.1 | Wheat | cytosol, nucleus, plastid | 60.78 | 69.92 |
| CDX90176 | Canola | nucleus | 58.82 | 69.23 |
| CDY63142 | Canola | nucleus | 58.82 | 69.23 |
| Bra010843.1-P | Field mustard | nucleus | 58.82 | 69.23 |
| CDY50785 | Canola | cytosol, nucleus, plastid | 58.82 | 69.23 |
| Bra005449.1-P | Field mustard | nucleus | 58.82 | 69.23 |
| CDY17226 | Canola | nucleus | 58.82 | 69.23 |
| AT2G34160.1 | Thale cress | cytosol | 58.17 | 68.46 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 58.17 | 68.46 |
| Bra032296.1-P | Field mustard | cytosol, nucleus, plastid | 58.17 | 68.46 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 57.52 | 67.69 |
| GSMUA_Achr6P05270_001 | Banana | cytosol | 58.82 | 67.16 |
| KRH44436 | Soybean | nucleus | 62.09 | 65.97 |
| GSMUA_Achr7P09990_001 | Banana | cytosol | 54.9 | 65.62 |
| TraesCS6B01G209900.1 | Wheat | cytosol, nucleus, plastid | 58.82 | 64.75 |
| Solyc06g068050.2.1 | Tomato | nucleus | 53.59 | 64.57 |
| PGSC0003DMT400073472 | Potato | cytosol | 52.94 | 63.78 |
| VIT_04s0023g02330.t01 | Wine grape | cytosol | 58.82 | 61.22 |
| KRH47470 | Soybean | nucleus | 54.25 | 60.14 |
| Zm00001d039663_P005 | Maize | nucleus, peroxisome, plastid | 69.28 | 53.27 |
| GSMUA_Achr7P10060_001 | Banana | extracellular | 30.72 | 41.23 |
| TraesCS3B01G473200.1 | Wheat | nucleus | 47.71 | 38.62 |
| Zm00001d008731_P001 | Maize | nucleus, plasma membrane, vacuole | 56.86 | 36.1 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G148300.1 | EnsemblPlantsGene:TraesCS3B01G148300 | Gene3D:3.30.110.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:Alba-like_dom_sf | InterPro:DNA/RNA-bd_Alba-like | InterPro:IPR036882 | InterPro:UCP030333_Alba | PANTHER:PTHR31947 | PANTHER:PTHR31947:SF11 |
| PFAM:PF01918 | PIRSF:PIRSF030333 | SEG:seg | SUPFAM:SSF82704 | MapMan:15.3.7.2.1 | : |
Description
No Description!
Coordinates
chr3B:+:139774788..139776609
Molecular Weight (calculated)
16239.1 Da
IEP (calculated)
4.589
GRAVY (calculated)
-0.388
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVEEITEGV RGLKVEDGEG AAAAADAPAA AAGGEGQRRG ANSSSNRIQV SNTKKPLFFY VNLAKRYMQQ HGDVELSALG MAIATVVTVA EILKNNGLAV
101: EKKIRTSTVE INDESRGRPF QKAKIEIELG KSEKFDELMA SAAADAEEGE EEA
101: EKKIRTSTVE INDESRGRPF QKAKIEIELG KSEKFDELMA SAAADAEEGE EEA
001: MEEITEGVNN MNLAVDTQKK NRIQVSNTKK PLFFYVNLAK RYMQQYTDVE LSALGMAIAT VVTVAEILKN NGFAVEKKIM TSTVDIKDDS RGRPVQKAKI
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
Arabidopsis Description
Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9LP53]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.