Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90176 | Canola | nucleus | 100.0 | 100.0 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 98.46 | 98.46 |
| AT1G29250.1 | Thale cress | cytosol, nucleus, plastid | 93.08 | 93.08 |
| Bra032296.1-P | Field mustard | cytosol, nucleus, plastid | 92.31 | 92.31 |
| Bra030127.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 90.77 | 90.77 |
| Bra005449.1-P | Field mustard | nucleus | 90.0 | 90.0 |
| GSMUA_Achr6P05140_001 | Banana | cytosol, nucleus, plastid | 76.15 | 76.74 |
| EER88613 | Sorghum | cytosol, nucleus, plastid | 76.15 | 76.74 |
| KRH23562 | Soybean | nucleus | 78.46 | 76.69 |
| VIT_11s0016g05100.t01 | Wine grape | nucleus | 76.15 | 76.15 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 73.85 | 74.42 |
| VIT_09s0002g06460.t01 | Wine grape | cytosol, nucleus, plastid | 73.85 | 74.42 |
| Os06t0602600-01 | Rice | nucleus | 75.38 | 74.24 |
| KRH09747 | Soybean | cytosol, nucleus, plasma membrane | 74.62 | 74.05 |
| GSMUA_Achr6P00670_001 | Banana | nucleus | 72.31 | 74.02 |
| TraesCS7A01G374500.1 | Wheat | nucleus | 73.08 | 71.97 |
| GSMUA_Achr2P17110_001 | Banana | cytosol, nucleus, plasma membrane | 72.31 | 71.76 |
| TraesCS7D01G348900.1 | Wheat | cytosol, nucleus, plastid | 72.31 | 71.21 |
| GSMUA_Achr7P08310_001 | Banana | cytosol | 72.31 | 71.21 |
| Solyc06g066100.2.1 | Tomato | nucleus | 70.0 | 71.09 |
| PGSC0003DMT400052773 | Potato | cytosol | 70.0 | 71.09 |
| PGSC0003DMT400052712 | Potato | cytosol | 70.0 | 71.09 |
| TraesCS7B01G252900.1 | Wheat | cytosol | 71.54 | 70.45 |
| Solyc06g065980.2.1 | Tomato | nucleus | 69.23 | 70.31 |
| PGSC0003DMT400073472 | Potato | cytosol | 68.46 | 70.08 |
| GSMUA_Achr7P09990_001 | Banana | cytosol | 68.46 | 69.53 |
| EES06481 | Sorghum | cytosol, nucleus, plastid | 75.38 | 69.5 |
| Solyc06g068050.2.1 | Tomato | nucleus | 67.69 | 69.29 |
| Zm00001d053625_P001 | Maize | extracellular, plasma membrane | 73.08 | 68.35 |
| TraesCS6B01G209900.1 | Wheat | cytosol, nucleus, plastid | 73.08 | 68.35 |
| TraesCS6D01G168100.1 | Wheat | cytosol, nucleus, plastid | 73.08 | 68.35 |
| TraesCS6A01G175200.1 | Wheat | cytosol, nucleus, plastid | 72.31 | 67.63 |
| KRH44436 | Soybean | nucleus | 74.62 | 67.36 |
| Os02t0202500-01 | Rice | nucleus | 35.38 | 66.67 |
| GSMUA_Achr6P05270_001 | Banana | cytosol | 66.15 | 64.18 |
| Os01t0173100-01 | Rice | nucleus | 74.62 | 63.82 |
| VIT_04s0023g02330.t01 | Wine grape | cytosol | 71.54 | 63.27 |
| EES00222 | Sorghum | cytosol, nucleus, plastid | 71.54 | 63.27 |
| TraesCS1B01G135500.1 | Wheat | cytosol, nucleus, plastid | 63.08 | 61.65 |
| TraesCS1A01G115600.1 | Wheat | cytosol, nucleus, plastid | 63.85 | 61.48 |
| TraesCS1D01G117000.1 | Wheat | cytosol | 63.08 | 61.19 |
| KRH47470 | Soybean | nucleus | 63.85 | 60.14 |
| TraesCS3D01G130100.1 | Wheat | cytosol, nucleus, plastid | 70.77 | 59.35 |
| TraesCS3B01G148300.1 | Wheat | cytosol, nucleus, plastid | 69.23 | 58.82 |
| TraesCS3A01G129200.1 | Wheat | cytosol, nucleus, plastid | 70.0 | 58.71 |
| EES19123 | Sorghum | nucleus | 58.46 | 56.72 |
| HORVU7Hr1G084100.1 | Barley | mitochondrion | 72.31 | 55.95 |
| Bra036129.1-P | Field mustard | plastid | 49.23 | 52.89 |
| Bra040393.1-P | Field mustard | cytosol | 59.23 | 50.66 |
| Bra001110.1-P | Field mustard | cytosol | 63.08 | 50.0 |
| Zm00001d046401_P001 | Maize | cytosol, nucleus, plasma membrane | 37.69 | 49.0 |
| HORVU1Hr1G025500.1 | Barley | cytosol, nucleus, plastid | 60.0 | 47.27 |
| Bra010003.1-P | Field mustard | cytosol | 55.38 | 46.45 |
| GSMUA_Achr7P10060_001 | Banana | extracellular | 37.69 | 42.98 |
| Zm00001d039663_P005 | Maize | nucleus, peroxisome, plastid | 61.54 | 40.2 |
| Zm00001d009798_P001 | Maize | cytosol | 53.08 | 37.5 |
| Zm00001d008731_P001 | Maize | nucleus, plasma membrane, vacuole | 50.0 | 26.97 |
Protein Annotations
| EnsemblPlants:Bra010843.1 | EnsemblPlants:Bra010843.1-P | EnsemblPlantsGene:Bra010843 | Gene3D:3.30.110.20 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:Alba-like_dom_sf | InterPro:DNA/RNA-bd_Alba-like | InterPro:IPR036882 | InterPro:UCP030333_Alba | ncoils:Coil |
| PANTHER:PTHR31947 | PANTHER:PTHR31947:SF11 | PFAM:PF01918 | PIRSF:PIRSF030333 | SEG:seg | SUPFAM:SSF82704 |
| UniParc:UPI00025454B4 | UniProt:M4D2Z0 | MapMan:15.3.7.2.1 | : | : | : |
Description
AT1G29250 (E=9e-054) | nucleic acid binding
Coordinates
chrA08:-:16754343..16755369
Molecular Weight (calculated)
14342.3 Da
IEP (calculated)
6.920
GRAVY (calculated)
-0.352
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGITEGVNN MSLAVDSQKK NRIQVSNTKK PLFFYVNLAK RYMQQYADVE LSALGMAIAT VVTVAEILKN SGFAVEKKIM TSTVDIKDGA RGRPVQKPKI
101: EITLAKSEKF DELMAAANED KEAAEAQEQN
101: EITLAKSEKF DELMAAANED KEAAEAQEQN
001: MEEITDGVNN MNLATDSQKK NRIQVSNTKK PLFFYVNLAK RYMQQYNDVE LSALGMAIAT VVTVTEILKN NGFAVEKKIM TSTVDIKDDA RGRPVQKAKI
101: EITLVKSEKF DELMAAANEE KEDAEAQVQN
101: EITLVKSEKF DELMAAANEE KEDAEAQVQN
Arabidopsis Description
Uncharacterized protein At2g34160 [Source:UniProtKB/Swiss-Prot;Acc:O22969]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.