Factsheet for Bra036129.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00026	Canola	cytosol, nucleus, plastid	80.17	78.86
CDY57017	Canola	cytosol, nucleus, plastid	80.17	78.86
KRH34103	Soybean	plastid	66.12	60.61
KRG92697	Soybean	plastid	64.46	59.09
Bra040393.1-P	Field mustard	cytosol	66.12	52.63
KRG96999	Soybean	nucleus	55.37	51.94
Bra010003.1-P	Field mustard	cytosol	66.12	51.61
Bra005449.1-P	Field mustard	nucleus	55.37	51.54
KRH68751	Soybean	plastid	57.85	50.72
Bra001110.1-P	Field mustard	cytosol	66.94	49.39
GSMUA_Achr4P13630_001	Banana	cytosol	54.55	49.25
Bra010843.1-P	Field mustard	nucleus	52.89	49.23
Bra030127.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	52.89	49.23
Bra032296.1-P	Field mustard	cytosol, nucleus, plastid	52.89	49.23
GSMUA_Achr4P06650_001	Banana	cytosol	58.68	47.97
PGSC0003DMT400070712	Potato	plastid	61.98	46.3
Solyc01g097050.2.1	Tomato	unclear	62.81	46.06
Os12t0489300-01	Rice	plasma membrane	54.55	39.05
HORVU3Hr1G095800.1	Barley	nucleus	54.55	34.92
TraesCS3B01G473200.1	Wheat	nucleus	54.55	34.92
TraesCS3A01G439300.1	Wheat	nucleus	54.55	34.92
EES17034	Sorghum	nucleus	54.55	34.74
TraesCS3D01G432100.1	Wheat	nucleus	53.72	34.39
Zm00001d023639_P002	Maize	cytosol	53.72	31.86

Protein Annotations

EnsemblPlants:Bra036129.1	EnsemblPlants:Bra036129.1-P	EnsemblPlantsGene:Bra036129	Gene3D:3.30.110.20	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:Alba-like_dom_sf	InterPro:DNA/RNA-bd_Alba-like	InterPro:IPR036882	InterPro:UCP030333_Alba	PANTHER:PTHR31947
PANTHER:PTHR31947:SF5	PFAM:PF01918	PIRSF:PIRSF030333	SUPFAM:SSF82704	UniParc:UPI0002541F38	UniProt:M4F4X5
MapMan:15.3.7.2.1	:	:	:	:	:

Description

AT3G04620 (E=3e-042) | nucleic acid binding

Coordinates

chrA09:-:2588430..2589246

Molecular Weight (calculated)

13336.3 Da

IEP (calculated)

10.575

GRAVY (calculated)

-0.040

Length

121 amino acids

Sequence
(BLAST)

001: MEIATPIHAP VTSPASNLII SATTAVETQK KNRIQVSNTK KPLFFYVNLA KRYIQQHNEV ELSALGMAIT TVVTISEILK NNGLATEKRV LTSTVGMKDE
101: NKGKIVQKTK ASFSFFLQLL S

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.