Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50744 | Canola | cytosol | 100.0 | 100.0 |
| Bra001110.1-P | Field mustard | cytosol | 89.47 | 82.93 |
| AT3G04620.1 | Thale cress | cytosol | 89.47 | 82.93 |
| Bra010003.1-P | Field mustard | cytosol | 74.34 | 72.9 |
| KRH34103 | Soybean | plastid | 59.21 | 68.18 |
| KRG92697 | Soybean | plastid | 59.21 | 68.18 |
| Bra036129.1-P | Field mustard | plastid | 52.63 | 66.12 |
| Bra005449.1-P | Field mustard | nucleus | 52.63 | 61.54 |
| Bra010843.1-P | Field mustard | nucleus | 50.66 | 59.23 |
| Bra032296.1-P | Field mustard | cytosol, nucleus, plastid | 50.66 | 59.23 |
| Bra030127.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 50.0 | 58.46 |
| KRH68751 | Soybean | plastid | 51.97 | 57.25 |
| KRG96999 | Soybean | nucleus | 47.37 | 55.81 |
| PGSC0003DMT400070712 | Potato | plastid | 59.21 | 55.56 |
| GSMUA_Achr4P13630_001 | Banana | cytosol | 48.68 | 55.22 |
| Solyc01g097050.2.1 | Tomato | unclear | 59.87 | 55.15 |
| GSMUA_Achr4P06650_001 | Banana | cytosol | 52.63 | 54.05 |
| Os12t0489300-01 | Rice | plasma membrane | 49.34 | 44.38 |
| TraesCS3A01G439300.1 | Wheat | nucleus | 51.32 | 41.27 |
| TraesCS3B01G473200.1 | Wheat | nucleus | 51.32 | 41.27 |
| HORVU3Hr1G095800.1 | Barley | nucleus | 50.66 | 40.74 |
| TraesCS3D01G432100.1 | Wheat | nucleus | 50.66 | 40.74 |
| EES17034 | Sorghum | nucleus | 48.03 | 38.42 |
| Zm00001d023639_P002 | Maize | cytosol | 48.03 | 35.78 |
Protein Annotations
| EnsemblPlants:Bra040393.1 | EnsemblPlants:Bra040393.1-P | EnsemblPlantsGene:Bra040393 | Gene3D:3.30.110.20 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:Alba-like_dom_sf | InterPro:DNA/RNA-bd_Alba-like | InterPro:IPR036882 | InterPro:UCP030333_Alba | PANTHER:PTHR31947 |
| PANTHER:PTHR31947:SF5 | PFAM:PF01918 | PIRSF:PIRSF030333 | SEG:seg | SUPFAM:SSF82704 | UniParc:UPI000253EC94 |
| UniProt:M4FH15 | MapMan:15.3.7.2.1 | : | : | : | : |
Description
AT3G04620 (E=1e-060) | nucleic acid binding
Coordinates
chrScaffold000203:-:6177..6999
Molecular Weight (calculated)
16461.0 Da
IEP (calculated)
6.548
GRAVY (calculated)
-0.199
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMEVATPAP APINAPERNI ILAPATVETH KKNRIQVSNT KKPLFFYVNL AKRYMQQHNE VELSALGMAI TTVVTISEIL KNNGLATEKK VLTSTVGMKD
101: ETKGRMIEIV LGKSDKFDSL VPPVTNGKTP EEVAKAETEA AVEVQEAAAT EA
101: ETKGRMIEIV LGKSDKFDSL VPPVTNGKTP EEVAKAETEA AVEVQEAAAT EA
001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV
Arabidopsis Description
Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.