Factsheet for Bra001110.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74179	Canola	cytosol	100.0	100.0
CDY40664	Canola	cytosol	89.02	90.68
Bra040393.1-P	Field mustard	cytosol	82.93	89.47
AT3G04620.1	Thale cress	cytosol	84.15	84.15
KRH34103	Soybean	plastid	57.93	71.97
KRG92697	Soybean	plastid	57.93	71.97
Bra010003.1-P	Field mustard	cytosol	66.46	70.32
Bra036129.1-P	Field mustard	plastid	49.39	66.94
Bra005449.1-P	Field mustard	nucleus	51.83	65.38
Bra010843.1-P	Field mustard	nucleus	50.0	63.08
Bra032296.1-P	Field mustard	cytosol, nucleus, plastid	50.0	63.08
KRH68751	Soybean	plastid	52.44	62.32
Bra030127.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	49.39	62.31
KRG96999	Soybean	nucleus	46.95	59.69
GSMUA_Achr4P13630_001	Banana	cytosol	48.17	58.96
PGSC0003DMT400070712	Potato	plastid	56.71	57.41
Solyc01g097050.2.1	Tomato	unclear	57.32	56.97
GSMUA_Achr4P06650_001	Banana	cytosol	51.22	56.76
Os12t0489300-01	Rice	plasma membrane	47.56	46.15
HORVU3Hr1G095800.1	Barley	nucleus	48.78	42.33
TraesCS3A01G439300.1	Wheat	nucleus	48.78	42.33
TraesCS3B01G473200.1	Wheat	nucleus	48.78	42.33
TraesCS3D01G432100.1	Wheat	nucleus	48.17	41.8
EES17034	Sorghum	nucleus	46.34	40.0
Zm00001d023639_P002	Maize	cytosol	46.34	37.25

Protein Annotations

MapMan:15.3.7.2.1	Gene3D:3.30.110.20	InterPro:Alba-like_dom_sf	EnsemblPlantsGene:Bra001110	EnsemblPlants:Bra001110.1	EnsemblPlants:Bra001110.1-P
InterPro:DNA/RNA-bd_Alba-like	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR036882	UniProt:M4CA81
PFAM:PF01918	PIRSF:PIRSF030333	PANTHER:PTHR31947	PANTHER:PTHR31947:SF5	SUPFAM:SSF82704	InterPro:UCP030333_Alba
UniParc:UPI000254095A	SEG:seg	:	:	:	:

Description

AT3G04620 (E=2e-057) | nucleic acid binding

Coordinates

chrA03:+:14804114..14805064

Molecular Weight (calculated)

17647.4 Da

IEP (calculated)

8.909

GRAVY (calculated)

-0.210

Length

164 amino acids

Sequence
(BLAST)

001: MAMEVATPAP APLTAPERNI VLVPSSVKAT AESHKKNRIQ VSNTKKPLFF YVNLAKRYMQ QHNEVELSAL GMAITTVVTI SEILKNNGLA IEKKVLTSTV
101: GMKDETKGRM VQKAKASIEI VLGKSDKFDS LVPPVTNGKT PEEVAKAETD AAIEAQEEAA ATEA

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.