Factsheet for HORVU3Hr1G095800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G439300.1	Wheat	nucleus	95.77	95.77
TraesCS3B01G473200.1	Wheat	nucleus	95.24	95.24
TraesCS3D01G432100.1	Wheat	nucleus	94.18	94.18
Os12t0489300-01	Rice	plasma membrane	67.72	75.74
EES17034	Sorghum	nucleus	73.02	72.63
GSMUA_Achr4P13630_001	Banana	cytosol	47.09	66.42
KRG92697	Soybean	plastid	43.92	62.88
Zm00001d023639_P002	Maize	cytosol	66.67	61.76
GSMUA_Achr4P06650_001	Banana	cytosol	47.62	60.81
KRH34103	Soybean	plastid	42.33	60.61
CDY00026	Canola	cytosol, nucleus, plastid	37.57	57.72
CDY57017	Canola	cytosol, nucleus, plastid	35.98	55.28
Bra036129.1-P	Field mustard	plastid	34.92	54.55
KRG96999	Soybean	nucleus	37.04	54.26
KRH68751	Soybean	plastid	37.57	51.45
Bra010003.1-P	Field mustard	cytosol	41.8	50.97
CDX86203	Canola	cytosol	41.8	50.97
CDY41887	Canola	cytosol	40.74	50.66
CDY50744	Canola	cytosol	40.74	50.66
Bra040393.1-P	Field mustard	cytosol	40.74	50.66
AT3G04620.1	Thale cress	cytosol	42.86	49.39
Bra001110.1-P	Field mustard	cytosol	42.33	48.78
CDX74179	Canola	cytosol	42.33	48.78
CDY40664	Canola	cytosol	41.27	48.45
PGSC0003DMT400070712	Potato	plastid	41.27	48.15
CDY21118	Canola	cytosol	39.68	48.08
VIT_05s0020g04890.t01	Wine grape	cytosol	36.51	47.92
Solyc01g097050.2.1	Tomato	unclear	40.74	46.67
CDY30010	Canola	cytosol	39.15	46.54
HORVU7Hr1G084100.1	Barley	mitochondrion	40.74	45.83
KRH77811	Soybean	cytosol	29.63	42.42
HORVU1Hr1G025500.1	Barley	cytosol, nucleus, plastid	34.39	39.39
CDY28657	Canola	mitochondrion	31.75	30.15
CDX79500	Canola	cytosol	26.45	28.25
CDY68615	Canola	nucleus, plastid	30.69	27.1
CDY53532	Canola	nucleus	33.33	26.69

Protein Annotations

MapMan:15.3.7.2.1	Gene3D:3.30.110.20	UniProt:A0A287ME21	InterPro:Alba-like_dom_sf	ncoils:Coil	InterPro:DNA/RNA-bd_Alba-like
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0007275	GO:GO:0008150
GO:GO:0009987	GO:GO:0030154	GO:GO:0048235	EnsemblPlantsGene:HORVU3Hr1G095800	EnsemblPlants:HORVU3Hr1G095800.1	InterPro:IPR036882
PFAM:PF01918	PANTHER:PTHR31947	PANTHER:PTHR31947:SF5	SUPFAM:SSF82704	UniParc:UPI000B46C207	SEG:seg

Description

No Description!

Coordinates

chrchr3H:-:650903333..650905367

Molecular Weight (calculated)

20884.8 Da

IEP (calculated)

4.945

GRAVY (calculated)

-0.524

Length

189 amino acids

Sequence
(BLAST)

001: MQAVRPATRE EAVEQSHAQA TSESEAQEVR EVVKAVEEEA PEEKEVAVVG EQKAIHAEVE ASEMEVEADI EAEAGVSAKK NRIQVSTNKK PLYFYVNLAK
101: RYMQNYDEVE LSALGMAIGT VVTVSEILKN NGLATEKKIL TSTIGTKDES KGRLVRKAKI EILLCKSENF NSIMSNKKSH KSADDEMKV

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.