Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_09s0002g06460.t01 | Wine grape | cytosol, nucleus, plastid | 52.08 | 58.14 |
| VIT_11s0016g05100.t01 | Wine grape | nucleus | 52.08 | 57.69 |
| GSMUA_Achr4P13630_001 | Banana | cytosol | 51.39 | 55.22 |
| KRH77811 | Soybean | cytosol | 44.44 | 48.48 |
| VIT_04s0023g02330.t01 | Wine grape | cytosol | 49.31 | 48.3 |
| GSMUA_Achr4P06650_001 | Banana | cytosol | 47.92 | 46.62 |
| Os12t0489300-01 | Rice | plasma membrane | 47.92 | 40.83 |
| HORVU3Hr1G095800.1 | Barley | nucleus | 47.92 | 36.51 |
| TraesCS3A01G439300.1 | Wheat | nucleus | 47.92 | 36.51 |
| TraesCS3B01G473200.1 | Wheat | nucleus | 47.92 | 36.51 |
| EES17034 | Sorghum | nucleus | 47.92 | 36.32 |
| TraesCS3D01G432100.1 | Wheat | nucleus | 47.22 | 35.98 |
| Zm00001d023639_P002 | Maize | cytosol | 47.22 | 33.33 |
Protein Annotations
| EntrezGene:100266636 | wikigene:100266636 | MapMan:15.3.7.2.1 | Gene3D:3.30.110.20 | InterPro:Alba-like_dom_sf | ProteinID:CCB50508 |
| ProteinID:CCB50508.1 | InterPro:DNA/RNA-bd_Alba-like | UniProt:F6HDZ3 | EMBL:FN595749 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036882 | EntrezGene:LOC100266636 | wikigene:LOC100266636 | PFAM:PF01918 | PIRSF:PIRSF030333 |
| PANTHER:PTHR31947 | PANTHER:PTHR31947:SF13 | SUPFAM:SSF82704 | InterPro:UCP030333_Alba | UniParc:UPI00019833EB | ArrayExpress:VIT_05s0020g04890 |
| EnsemblPlantsGene:VIT_05s0020g04890 | EnsemblPlants:VIT_05s0020g04890.t01 | RefSeq:XP_002280347 | RefSeq:XP_002280347.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr5:+:6754875..6756137
Molecular Weight (calculated)
15654.8 Da
IEP (calculated)
9.675
GRAVY (calculated)
-0.373
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAIVVAENL EESMKKSSLG NATETQKKNR IQVSNSKKPL FFYINLAKRY IKQYNDVELS ALGMAIPSVV TIAEILKKNG VATQKKILTS TVDMKWETNG
101: RTVQKAKIEI VLGKPEDSDN QAAATAVAAA AAATPAEENA DKKE
101: RTVQKAKIEI VLGKPEDSDN QAAATAVAAA AAATPAEENA DKKE
001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV
Arabidopsis Description
Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.