Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G439300.1 | Wheat | nucleus | 97.88 | 97.88 |
| TraesCS3B01G473200.1 | Wheat | nucleus | 96.3 | 96.3 |
| HORVU3Hr1G095800.1 | Barley | nucleus | 94.18 | 94.18 |
| Os12t0489300-01 | Rice | plasma membrane | 66.14 | 73.96 |
| EES17034 | Sorghum | nucleus | 71.96 | 71.58 |
| GSMUA_Achr4P13630_001 | Banana | cytosol | 46.56 | 65.67 |
| KRG92697 | Soybean | plastid | 43.39 | 62.12 |
| Zm00001d023639_P002 | Maize | cytosol | 65.61 | 60.78 |
| GSMUA_Achr4P06650_001 | Banana | cytosol | 47.09 | 60.14 |
| KRH34103 | Soybean | plastid | 41.8 | 59.85 |
| CDY00026 | Canola | cytosol, nucleus, plastid | 37.04 | 56.91 |
| TraesCS7D01G348900.1 | Wheat | cytosol, nucleus, plastid | 38.62 | 55.3 |
| CDY57017 | Canola | cytosol, nucleus, plastid | 35.45 | 54.47 |
| Bra036129.1-P | Field mustard | plastid | 34.39 | 53.72 |
| KRG96999 | Soybean | nucleus | 36.51 | 53.49 |
| KRH68751 | Soybean | plastid | 37.04 | 50.72 |
| CDY41887 | Canola | cytosol | 40.74 | 50.66 |
| CDY50744 | Canola | cytosol | 40.74 | 50.66 |
| Bra040393.1-P | Field mustard | cytosol | 40.74 | 50.66 |
| TraesCS6D01G168100.1 | Wheat | cytosol, nucleus, plastid | 37.04 | 50.36 |
| Bra010003.1-P | Field mustard | cytosol | 41.27 | 50.32 |
| CDX86203 | Canola | cytosol | 41.27 | 50.32 |
| TraesCS1D01G117000.1 | Wheat | cytosol | 35.45 | 50.0 |
| AT3G04620.1 | Thale cress | cytosol | 42.86 | 49.39 |
| Bra001110.1-P | Field mustard | cytosol | 41.8 | 48.17 |
| CDX74179 | Canola | cytosol | 41.8 | 48.17 |
| CDY21118 | Canola | cytosol | 39.68 | 48.08 |
| CDY40664 | Canola | cytosol | 40.74 | 47.83 |
| TraesCS3D01G130100.1 | Wheat | cytosol, nucleus, plastid | 39.15 | 47.74 |
| PGSC0003DMT400070712 | Potato | plastid | 40.74 | 47.53 |
| VIT_05s0020g04890.t01 | Wine grape | cytosol | 35.98 | 47.22 |
| CDY30010 | Canola | cytosol | 39.15 | 46.54 |
| Solyc01g097050.2.1 | Tomato | unclear | 40.21 | 46.06 |
| KRH77811 | Soybean | cytosol | 29.63 | 42.42 |
| CDY28657 | Canola | mitochondrion | 31.22 | 29.65 |
| CDX79500 | Canola | cytosol | 25.93 | 27.68 |
| CDY68615 | Canola | nucleus, plastid | 30.16 | 26.64 |
| CDY53532 | Canola | nucleus | 31.75 | 25.42 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G432100.1 | EnsemblPlantsGene:TraesCS3D01G432100 | Gene3D:3.30.110.20 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0048235 |
| InterPro:Alba-like_dom_sf | InterPro:DNA/RNA-bd_Alba-like | InterPro:IPR036882 | PANTHER:PTHR31947 | PANTHER:PTHR31947:SF5 | PFAM:PF01918 |
| SEG:seg | SUPFAM:SSF82704 | MapMan:15.3.7.2.1 | : | : | : |
Description
No Description!
Coordinates
chr3D:+:545920351..545921934
Molecular Weight (calculated)
20999.1 Da
IEP (calculated)
4.940
GRAVY (calculated)
-0.452
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAVRPLARE EAVEQLHAQA MGESEAQEVR EVVKAVEEDA PEEKEVAVVG EQKAAHVEVE ADEMEVEADI EAEAGVSAKK NRIQVSTNKK PLYFYVNLAK
101: RYMQNYDEVE LSALGMAIGT VVTVSEILKN NGLATEKKIL TSTIGTKYES KGRLVRKAKI EILLCKSENF NSIMSNKKSH KSVDDEMKV
101: RYMQNYDEVE LSALGMAIGT VVTVSEILKN NGLATEKKIL TSTIGTKYES KGRLVRKAKI EILLCKSENF NSIMSNKKSH KSVDDEMKV
001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV
Arabidopsis Description
Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.