CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010003.1-P	Field mustard	cytosol	100.0	100.0
CDY57017	Canola	cytosol, nucleus, plastid	62.58	78.86
CDY00026	Canola	cytosol, nucleus, plastid	61.94	78.05
CDY50744	Canola	cytosol	72.9	74.34
CDY41887	Canola	cytosol	72.9	74.34
CDY21118	Canola	cytosol	72.9	72.44
CDY30010	Canola	cytosol	71.61	69.81
KRH34103	Soybean	plastid	59.35	69.7
KRG92697	Soybean	plastid	58.06	68.18
CDX74179	Canola	cytosol	70.32	66.46
CDY40664	Canola	cytosol	67.1	64.6
CDY17226	Canola	nucleus	49.03	58.46
CDY63142	Canola	nucleus	49.03	58.46
Solyc01g097050.2.1	Tomato	unclear	61.29	57.58
KRG96999	Soybean	nucleus	47.74	57.36
CDY50785	Canola	cytosol, nucleus, plastid	47.1	56.15
GSMUA_Achr4P13630_001	Banana	cytosol	48.39	55.97
KRH68751	Soybean	plastid	49.68	55.8
CDX90176	Canola	nucleus	46.45	55.38
CDY43326	Canola	cytosol, nucleus, plastid	46.45	55.38
PGSC0003DMT400070712	Potato	plastid	57.42	54.94
CDX94654	Canola	cytosol, endoplasmic reticulum, nucleus	45.81	54.62
CDX99800	Canola	cytosol, nucleus, plastid	45.81	54.62
CDY15643	Canola	cytosol, endoplasmic reticulum, nucleus	45.81	54.62
CDY15644	Canola	cytosol, endoplasmic reticulum, nucleus	45.81	54.62
GSMUA_Achr4P06650_001	Banana	cytosol	50.32	52.7
Os12t0489300-01	Rice	plasma membrane	49.68	45.56
CDX79500	Canola	cytosol	49.68	43.5
CDY28657	Canola	mitochondrion	54.84	42.71
HORVU3Hr1G095800.1	Barley	nucleus	50.97	41.8
TraesCS3A01G439300.1	Wheat	nucleus	50.97	41.8
TraesCS3B01G473200.1	Wheat	nucleus	50.97	41.8
TraesCS3D01G432100.1	Wheat	nucleus	50.32	41.27
EES17034	Sorghum	nucleus	48.39	39.47
CDY68615	Canola	nucleus, plastid	52.26	37.85
Zm00001d023639_P002	Maize	cytosol	48.39	36.76
CDY53532	Canola	nucleus	44.52	29.24

Protein Annotations

MapMan:15.3.7.2.1	Gene3D:3.30.110.20	GO:A0A078DFW3	InterPro:Alba-like_dom_sf	EnsemblPlants:CDX86203	ProteinID:CDX86203
ProteinID:CDX86203.1	InterPro:DNA/RNA-bd_Alba-like	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00144290001
InterPro:IPR036882	PFAM:PF01918	PIRSF:PIRSF030333	PANTHER:PTHR31947	PANTHER:PTHR31947:SF5	SUPFAM:SSF82704
InterPro:UCP030333_Alba	UniParc:UPI000253EE5E	SEG:seg	:	:	:

Description

BnaA06g29200D

Coordinates

chrLK031845:-:345140..346260

Molecular Weight (calculated)

17021.5 Da

IEP (calculated)

6.282

GRAVY (calculated)

-0.360

Length

155 amino acids

Sequence
(BLAST)

001: MAMEVATPVH APAPSPATNL IVSATTTAVE THKKNRIQVS NTKKPLFFYV NLAKRYIQQH NEVELSALGM AITTVVTISE ILKNNGLATE KKVLTSTVGM
101: KDENKGRVIE IVLGKSDKFD SLMTPVTKDT VKEEKAVNTE EEPIETEVKP EGKEE

Best Arabidopsis Sequence Match ( AT1G29250.1 )
(BLAST)

001: MEEITEGVNN MNLAVDTQKK NRIQVSNTKK PLFFYVNLAK RYMQQYTDVE LSALGMAIAT VVTVAEILKN NGFAVEKKIM TSTVDIKDDS RGRPVQKAKI
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9LP53]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.