Factsheet for TraesCS3A01G439300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G432100.1	Wheat	nucleus	97.88	97.88
TraesCS3B01G473200.1	Wheat	nucleus	97.88	97.88
HORVU3Hr1G095800.1	Barley	nucleus	95.77	95.77
Os12t0489300-01	Rice	plasma membrane	67.2	75.15
EES17034	Sorghum	nucleus	72.49	72.11
GSMUA_Achr4P13630_001	Banana	cytosol	47.09	66.42
KRG92697	Soybean	plastid	43.92	62.88
Zm00001d023639_P002	Maize	cytosol	66.14	61.27
GSMUA_Achr4P06650_001	Banana	cytosol	47.62	60.81
KRH34103	Soybean	plastid	42.33	60.61
CDY00026	Canola	cytosol, nucleus, plastid	37.57	57.72
TraesCS7A01G374500.1	Wheat	nucleus	39.15	56.06
CDY57017	Canola	cytosol, nucleus, plastid	35.98	55.28
Bra036129.1-P	Field mustard	plastid	34.92	54.55
KRG96999	Soybean	nucleus	37.04	54.26
KRH68751	Soybean	plastid	37.57	51.45
CDY50744	Canola	cytosol	41.27	51.32
CDY41887	Canola	cytosol	41.27	51.32
Bra040393.1-P	Field mustard	cytosol	41.27	51.32
TraesCS1A01G115600.1	Wheat	cytosol, nucleus, plastid	36.51	51.11
CDX86203	Canola	cytosol	41.8	50.97
Bra010003.1-P	Field mustard	cytosol	41.8	50.97
TraesCS6A01G175200.1	Wheat	cytosol, nucleus, plastid	37.04	50.36
AT3G04620.1	Thale cress	cytosol	43.39	50.0
TraesCS3A01G129200.1	Wheat	cytosol, nucleus, plastid	40.74	49.68
Bra001110.1-P	Field mustard	cytosol	42.33	48.78
CDX74179	Canola	cytosol	42.33	48.78
CDY21118	Canola	cytosol	40.21	48.72
CDY40664	Canola	cytosol	41.27	48.45
PGSC0003DMT400070712	Potato	plastid	41.27	48.15
VIT_05s0020g04890.t01	Wine grape	cytosol	36.51	47.92
CDY30010	Canola	cytosol	39.68	47.17
Solyc01g097050.2.1	Tomato	unclear	40.74	46.67
KRH77811	Soybean	cytosol	29.63	42.42
CDY28657	Canola	mitochondrion	31.75	30.15
CDX79500	Canola	cytosol	26.45	28.25
CDY68615	Canola	nucleus, plastid	30.69	27.1
CDY53532	Canola	nucleus	32.8	26.27

Protein Annotations

MapMan:15.3.7.2.1	Gene3D:3.30.110.20	InterPro:Alba-like_dom_sf	InterPro:DNA/RNA-bd_Alba-like	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0009987	GO:GO:0030154
GO:GO:0048235	InterPro:IPR036882	PFAM:PF01918	PANTHER:PTHR31947	PANTHER:PTHR31947:SF5	SUPFAM:SSF82704
EnsemblPlantsGene:TraesCS3A01G439300	EnsemblPlants:TraesCS3A01G439300.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3A:+:682332319..682333904

Molecular Weight (calculated)

20910.9 Da

IEP (calculated)

4.847

GRAVY (calculated)

-0.501

Length

189 amino acids

Sequence
(BLAST)

001: MQAVRPSARE EAVEQLHAQA MGESEAQEVR EVVKAVEEEA PEEKEVAVVG EQKAAHAEVE ADEMEVEADI EAEAGVSAKK NRIQVSTNKK PLYFYVNLAK
101: RYMQNYDEVE LSALGMAIGT VVTVSEILKN NGLATEKKIL TSTIGTKDES KGRLVRKAKI EILLCKSENF NSIMSNKKSH KSVDDEMKV

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.