CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68615	Canola	nucleus, plastid	75.88	70.56
CDY41887	Canola	cytosol	49.75	65.13
CDY50744	Canola	cytosol	49.25	64.47
CDY21118	Canola	cytosol	48.74	62.18
CDX79500	Canola	cytosol	53.77	60.45
CDY30010	Canola	cytosol	48.24	60.38
AT3G04620.1	Thale cress	cytosol	49.25	59.76
CDY00026	Canola	cytosol, nucleus, plastid	35.68	57.72
CDY57017	Canola	cytosol, nucleus, plastid	35.68	57.72
CDX74179	Canola	cytosol	47.24	57.32
CDX86203	Canola	cytosol	42.71	54.84
CDY40664	Canola	cytosol	42.21	52.17
KRG92697	Soybean	plastid	33.17	50.0
KRH34103	Soybean	plastid	32.66	49.24
CDY43326	Canola	cytosol, nucleus, plastid	28.14	43.08
CDY63142	Canola	nucleus	28.14	43.08
CDY17226	Canola	nucleus	28.14	43.08
CDY50785	Canola	cytosol, nucleus, plastid	27.64	42.31
CDX90176	Canola	nucleus	27.64	42.31
KRH68751	Soybean	plastid	29.15	42.03
PGSC0003DMT400070712	Potato	plastid	34.17	41.98
KRG96999	Soybean	nucleus	27.14	41.86
Solyc01g097050.2.1	Tomato	unclear	34.17	41.21
CDY15644	Canola	cytosol, endoplasmic reticulum, nucleus	26.63	40.77
CDY15643	Canola	cytosol, endoplasmic reticulum, nucleus	26.63	40.77
CDX99800	Canola	cytosol, nucleus, plastid	26.63	40.77
CDX94654	Canola	cytosol, endoplasmic reticulum, nucleus	26.63	40.77
GSMUA_Achr4P13630_001	Banana	cytosol	27.14	40.3
GSMUA_Achr4P06650_001	Banana	cytosol	29.15	39.19
CDY53532	Canola	nucleus	40.2	33.9
Os12t0489300-01	Rice	plasma membrane	28.14	33.14
HORVU3Hr1G095800.1	Barley	nucleus	30.15	31.75
TraesCS3A01G439300.1	Wheat	nucleus	30.15	31.75
TraesCS3B01G473200.1	Wheat	nucleus	30.15	31.75
TraesCS3D01G432100.1	Wheat	nucleus	29.65	31.22
EES17034	Sorghum	nucleus	28.14	29.47
Zm00001d023639_P002	Maize	cytosol	28.64	27.94

Protein Annotations

EnsemblPlants:CDY28657	EnsemblPlantsGene:GSBRNA2T00040727001	Gene3D:3.30.110.20	GO:A0A078GU69	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:Alba-like_dom_sf	InterPro:IPR036882	PANTHER:PTHR31947	PANTHER:PTHR31947:SF5	ProteinID:CDY28657
ProteinID:CDY28657.1	SEG:seg	SUPFAM:SSF82704	UniParc:UPI0004EE62D0	UniProt:A0A078GU69	MapMan:15.3.7.2.1

Description

BnaC09g32180DBnaC09g32180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GU69]

Coordinates

chrLK032224:+:484673..486121

Molecular Weight (calculated)

22042.1 Da

IEP (calculated)

8.882

GRAVY (calculated)

-0.174

Length

199 amino acids

Sequence
(BLAST)

001: MKRGSSSSLL FVWRRCGDDC VSSHNLNGRF NGSMIHHPRS TFNEWPQPQN EEICLAMEEA KFEEKKMAME IATPAPAPIT SPEINIILSP AKTKTHKKNM
101: IQVSNTKKPL FFDVNLAKLE IGLVDLVLIP EQSLAFISIM MVVTISEILK NTGLTTDKKV LTSTVGMKDE AKGKMIEIVL GKSDKFDSLV PPVTNGKTP

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.