Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50744 | Canola | cytosol | 99.34 | 99.34 |
| CDY21118 | Canola | cytosol | 93.42 | 91.03 |
| CDY30010 | Canola | cytosol | 92.76 | 88.68 |
| CDX74179 | Canola | cytosol | 90.13 | 83.54 |
| AT3G04620.1 | Thale cress | cytosol | 89.47 | 82.93 |
| CDY40664 | Canola | cytosol | 82.89 | 78.26 |
| CDX86203 | Canola | cytosol | 74.34 | 72.9 |
| CDY00026 | Canola | cytosol, nucleus, plastid | 58.55 | 72.36 |
| CDY57017 | Canola | cytosol, nucleus, plastid | 58.55 | 72.36 |
| KRH34103 | Soybean | plastid | 59.21 | 68.18 |
| KRG92697 | Soybean | plastid | 59.21 | 68.18 |
| CDY63142 | Canola | nucleus | 53.29 | 62.31 |
| CDY17226 | Canola | nucleus | 53.29 | 62.31 |
| CDY50785 | Canola | cytosol, nucleus, plastid | 51.97 | 60.77 |
| CDX90176 | Canola | nucleus | 51.32 | 60.0 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 51.32 | 60.0 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 50.66 | 59.23 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 50.66 | 59.23 |
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 50.66 | 59.23 |
| CDX94654 | Canola | cytosol, endoplasmic reticulum, nucleus | 50.66 | 59.23 |
| KRH68751 | Soybean | plastid | 51.97 | 57.25 |
| PGSC0003DMT400070712 | Potato | plastid | 59.87 | 56.17 |
| KRG96999 | Soybean | nucleus | 47.37 | 55.81 |
| GSMUA_Achr4P13630_001 | Banana | cytosol | 48.68 | 55.22 |
| Solyc01g097050.2.1 | Tomato | unclear | 59.87 | 55.15 |
| GSMUA_Achr4P06650_001 | Banana | cytosol | 52.63 | 54.05 |
| CDX79500 | Canola | cytosol | 59.21 | 50.85 |
| CDY28657 | Canola | mitochondrion | 65.13 | 49.75 |
| CDY68615 | Canola | nucleus, plastid | 62.5 | 44.39 |
| Os12t0489300-01 | Rice | plasma membrane | 49.34 | 44.38 |
| TraesCS3B01G473200.1 | Wheat | nucleus | 51.32 | 41.27 |
| TraesCS3A01G439300.1 | Wheat | nucleus | 51.32 | 41.27 |
| TraesCS3D01G432100.1 | Wheat | nucleus | 50.66 | 40.74 |
| HORVU3Hr1G095800.1 | Barley | nucleus | 50.66 | 40.74 |
| EES17034 | Sorghum | nucleus | 48.03 | 38.42 |
| Zm00001d023639_P002 | Maize | cytosol | 48.03 | 35.78 |
| CDY53532 | Canola | nucleus | 51.32 | 33.05 |
Protein Annotations
| EnsemblPlants:CDY41887 | EnsemblPlantsGene:GSBRNA2T00073861001 | Gene3D:3.30.110.20 | GO:A0A078HVM2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:Alba-like_dom_sf | InterPro:DNA/RNA-bd_Alba-like | InterPro:IPR036882 | InterPro:UCP030333_Alba | PANTHER:PTHR31947 |
| PANTHER:PTHR31947:SF5 | PFAM:PF01918 | PIRSF:PIRSF030333 | ProteinID:CDY41887 | ProteinID:CDY41887.1 | SEG:seg |
| SUPFAM:SSF82704 | UniParc:UPI0004EDE2F7 | UniProt:A0A078HVM2 | MapMan:15.3.7.2.1 | : | : |
Description
BnaC05g47170DBnaC05g47170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVM2]
Coordinates
chrLK032510:-:1150..2409
Molecular Weight (calculated)
16448.0 Da
IEP (calculated)
6.548
GRAVY (calculated)
-0.180
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMEVATPAP APITAPERNI ILAPATVETH KKNRIQVSNT KKPLFFYVNL AKRYMQQHNE VELSALGMAI TTVVTISEIL KNNGLATEKK VLTSTVGMKD
101: ETKGRMIEIV LGKSDKFDSL VPPVTNGKTP EEVAKAETEA AVEVQEAAAT EA
101: ETKGRMIEIV LGKSDKFDSL VPPVTNGKTP EEVAKAETEA AVEVQEAAAT EA
001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV
Arabidopsis Description
Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.