Factsheet for Os12t0489300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17034	Sorghum	nucleus	81.66	72.63
GSMUA_Achr4P13630_001	Banana	cytosol	54.44	68.66
HORVU3Hr1G095800.1	Barley	nucleus	75.74	67.72
TraesCS3B01G473200.1	Wheat	nucleus	75.15	67.2
TraesCS3A01G439300.1	Wheat	nucleus	75.15	67.2
TraesCS3D01G432100.1	Wheat	nucleus	73.96	66.14
Zm00001d023639_P002	Maize	cytosol	78.11	64.71
GSMUA_Achr4P06650_001	Banana	cytosol	54.44	62.16
KRG92697	Soybean	plastid	46.75	59.85
KRH34103	Soybean	plastid	46.15	59.09
Os06t0602600-01	Rice	nucleus	45.56	58.33
KRG96999	Soybean	nucleus	43.2	56.59
CDY00026	Canola	cytosol, nucleus, plastid	40.24	55.28
Bra036129.1-P	Field mustard	plastid	39.05	54.55
Os01t0173100-01	Rice	nucleus	48.52	53.95
CDY57017	Canola	cytosol, nucleus, plastid	38.46	52.85
KRH68751	Soybean	plastid	42.6	52.17
PGSC0003DMT400070712	Potato	plastid	47.93	50.0
Bra010003.1-P	Field mustard	cytosol	45.56	49.68
CDX86203	Canola	cytosol	45.56	49.68
CDY50744	Canola	cytosol	44.38	49.34
Bra040393.1-P	Field mustard	cytosol	44.38	49.34
CDY41887	Canola	cytosol	44.38	49.34
Os02t0202500-01	Rice	nucleus	20.12	49.28
AT3G04620.1	Thale cress	cytosol	46.75	48.17
VIT_05s0020g04890.t01	Wine grape	cytosol	40.83	47.92
CDX74179	Canola	cytosol	46.15	47.56
Bra001110.1-P	Field mustard	cytosol	46.15	47.56
Solyc01g097050.2.1	Tomato	unclear	46.15	47.27
CDY40664	Canola	cytosol	44.97	47.2
CDY21118	Canola	cytosol	43.2	46.79
CDY30010	Canola	cytosol	42.6	45.28
KRH77811	Soybean	cytosol	31.95	40.91
CDX79500	Canola	cytosol	30.77	29.38
CDY28657	Canola	mitochondrion	33.14	28.14
CDY68615	Canola	nucleus, plastid	32.54	25.7
CDY53532	Canola	nucleus	33.73	24.15

Protein Annotations

MapMan:15.3.7.2.1	Gene3D:3.30.110.20	EntrezGene:4352244	ProteinID:ABA98281.1	EMBL:AK071524	InterPro:Alba-like_dom_sf
ProteinID:BAF29814.1	ProteinID:BAT17191.1	InterPro:DNA/RNA-bd_Alba-like	ProteinID:EEE53229.1	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0009987	GO:GO:0030154
GO:GO:0048235	InterPro:IPR036882	EnsemblPlantsGene:Os12g0489300	EnsemblPlants:Os12t0489300-01	PFAM:PF01918	PIRSF:PIRSF030333
PANTHER:PTHR31947	PANTHER:PTHR31947:SF5	UniProt:Q2QQM2	SUPFAM:SSF82704	InterPro:UCP030333_Alba	UniParc:UPI00006810C2
RefSeq:XP_015620656.1	SEG:seg	:	:	:	:

Description

Alba, DNA/RNA-binding protein family protein. (Os12t0489300-01)

Coordinates

chr12:-:18351588..18353679

Molecular Weight (calculated)

18768.3 Da

IEP (calculated)

4.546

GRAVY (calculated)

-0.586

Length

169 amino acids

Sequence
(BLAST)

001: MQAVREEEEQ VVEEVVRAGA VAEEEEGPEE KEVAMVGEEM AEAEHDEEEA EAGASAKKNR IQVSTNKKPL YFYVNLAKRY MQNYDEVELS ALGMAIGTVV
101: TVAEILKNNG LATEKKILTS TIGTKDESKG RLVRKAKIEI LLCKSENFNS IMSSKKSDRP KSAEEEIKV

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.