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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 2
  • plastid 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:mitochondrion, nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 cytosol: 19685898
nucleus: 23303719
nucleus: 23777608
nucleus: 24133045
plasma membrane: 27800704
plastid: 27992503
msms PMID: 24133045 doi
DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty
National Institute of Plant Genome Research, New Delhi, India.
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 19685898 doi
KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita
Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.
msms PMID: 23303719 doi
Q He, L Chen, Y Xu, W Yu
State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES00222 Sorghum cytosol, nucleus, plastid 80.92 83.67
AT1G29250.1 Thale cress cytosol, nucleus, plastid 67.11 78.46
TraesCS3B01G148300.1 Wheat cytosol, nucleus, plastid 78.95 78.43
TraesCS3D01G130100.1 Wheat cytosol, nucleus, plastid 78.95 77.42
CDY15643 Canola cytosol, endoplasmic reticulum, nucleus 65.79 76.92
CDX94654 Canola cytosol, endoplasmic reticulum, nucleus 65.79 76.92
TraesCS3A01G129200.1 Wheat cytosol, nucleus, plastid 78.29 76.77
GSMUA_Achr6P05140_001 Banana cytosol, nucleus, plastid 65.13 76.74
Bra030127.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 65.13 76.15
CDY15644 Canola cytosol, endoplasmic reticulum, nucleus 65.13 76.15
CDY50785 Canola cytosol, nucleus, plastid 65.13 76.15
Bra032296.1-P Field mustard cytosol, nucleus, plastid 64.47 75.38
CDY17226 Canola nucleus 64.47 75.38
CDY63142 Canola nucleus 64.47 75.38
Bra005449.1-P Field mustard nucleus 64.47 75.38
Os06t0602600-01 Rice nucleus 65.13 75.0
VIT_11s0016g05100.t01 Wine grape nucleus 63.82 74.62
AT2G34160.1 Thale cress cytosol 63.82 74.62
CDX99800 Canola cytosol, nucleus, plastid 63.82 74.62
CDX90176 Canola nucleus 63.82 74.62
Bra010843.1-P Field mustard nucleus 63.82 74.62
VIT_09s0002g06460.t01 Wine grape cytosol, nucleus, plastid 63.16 74.42
GSMUA_Achr2P17110_001 Banana cytosol, nucleus, plasma membrane 63.82 74.05
Os02t0202500-01 Rice nucleus 33.55 73.91
CDY43326 Canola cytosol, nucleus, plastid 62.5 73.08
KRH09747 Soybean cytosol, nucleus, plasma membrane 62.5 72.52
GSMUA_Achr6P00670_001 Banana nucleus 60.53 72.44
KRH23562 Soybean nucleus 63.16 72.18
GSMUA_Achr10P... Banana cytosol, nucleus, plastid 60.53 71.32
GSMUA_Achr7P08310_001 Banana cytosol 61.84 71.21
GSMUA_Achr7P09990_001 Banana cytosol 57.89 68.75
GSMUA_Achr6P05270_001 Banana cytosol 59.21 67.16
KRH44436 Soybean nucleus 61.18 64.58
Solyc06g068050.2.1 Tomato nucleus 53.95 64.57
PGSC0003DMT400073472 Potato cytosol 53.29 63.78
VIT_04s0023g02330.t01 Wine grape cytosol 59.87 61.9
KRH47470 Soybean nucleus 52.63 57.97
Zm00001d039663_P005 Maize nucleus, peroxisome, plastid 71.71 54.77
Os12t0489300-01 Rice plasma membrane 53.95 48.52
GSMUA_Achr7P10060_001 Banana extracellular 31.58 42.11
Zm00001d008731_P001 Maize nucleus, plasma membrane, vacuole 58.55 36.93
Protein Annotations
MapMan:15.3.7.2.1Gene3D:3.30.110.20EntrezGene:4327120EMBL:AK121114InterPro:Alba-like_dom_sfProteinID:BAB62549.1
ProteinID:BAF04071.1ProteinID:BAS70644.1ncoils:CoilInterPro:DNA/RNA-bd_Alba-likeProteinID:EAZ10729.1GO:GO:0003674
GO:GO:0003676GO:GO:0005488InterPro:IPR036882EnsemblPlantsGene:Os01g0173100EnsemblPlants:Os01t0173100-01PFAM:PF01918
PIRSF:PIRSF030333PANTHER:PTHR31947PANTHER:PTHR31947:SF11UniProt:Q94E63SUPFAM:SSF82704InterPro:UCP030333_Alba
UniParc:UPI00000A0A9ERefSeq:XP_015646669.1SEG:seg:::
Description
acetylation lowers binding affinity protein 1, Alba family protein 1Alba, DNA/RNA-binding protein family protein. (Os01t0173100-01)
Coordinates
chr1:-:3742778..3744461
Molecular Weight (calculated)
16261.3 Da
IEP (calculated)
4.783
GRAVY (calculated)
-0.279
Length
152 amino acids
Sequence
(BLAST)
001: MAVEEITEGV RNLAVEGEPA AAAAAAGGGG EGAQRRAAGS SSNRIQVSNT KKPLFFYVNL AKRYMQQHGD VELSALGMAI ATVVTVAEIL KNNGFAVEKK
101: IRTSTVEIND ESRVRPLQKA KIEIVLEKSE KFDELMAAAA EEREAAEAEE QA
Best Arabidopsis Sequence Match ( AT2G34160.1 )
(BLAST)
001: MEEITDGVNN MNLATDSQKK NRIQVSNTKK PLFFYVNLAK RYMQQYNDVE LSALGMAIAT VVTVTEILKN NGFAVEKKIM TSTVDIKDDA RGRPVQKAKI
101: EITLVKSEKF DELMAAANEE KEDAEAQVQN
Arabidopsis Description
Uncharacterized protein At2g34160 [Source:UniProtKB/Swiss-Prot;Acc:O22969]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.