CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytoskeleton 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09747	Soybean	cytosol, nucleus, plasma membrane	82.64	90.84
KRH23562	Soybean	nucleus	80.56	87.22
VIT_09s0002g06460.t01	Wine grape	cytosol, nucleus, plastid	77.78	86.82
KRH47470	Soybean	nucleus	79.86	83.33
GSMUA_Achr6P05140_001	Banana	cytosol, nucleus, plastid	73.61	82.17
GSMUA_Achr6P00670_001	Banana	nucleus	72.22	81.89
GSMUA_Achr2P17110_001	Banana	cytosol, nucleus, plasma membrane	72.92	80.15
GSMUA_Achr7P08310_001	Banana	cytosol	72.92	79.55
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	70.83	79.07
EER88613	Sorghum	cytosol, nucleus, plastid	70.83	79.07
Os06t0602600-01	Rice	nucleus	72.22	78.79
AT1G29250.1	Thale cress	cytosol, nucleus, plastid	70.14	77.69
TraesCS7D01G348900.1	Wheat	cytosol, nucleus, plastid	70.14	76.52
CDY63142	Canola	nucleus	68.75	76.15
CDY17226	Canola	nucleus	68.75	76.15
Bra005449.1-P	Field mustard	nucleus	68.75	76.15
AT2G34160.1	Thale cress	cytosol	68.75	76.15
TraesCS7B01G252900.1	Wheat	cytosol	69.44	75.76
TraesCS7A01G374500.1	Wheat	nucleus	69.44	75.76
CDY50785	Canola	cytosol, nucleus, plastid	68.06	75.38
CDY15644	Canola	cytosol, endoplasmic reticulum, nucleus	68.06	75.38
Bra030127.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	68.06	75.38
CDY43326	Canola	cytosol, nucleus, plastid	67.36	74.62
CDY15643	Canola	cytosol, endoplasmic reticulum, nucleus	67.36	74.62
CDX94654	Canola	cytosol, endoplasmic reticulum, nucleus	67.36	74.62
CDX90176	Canola	nucleus	67.36	74.62
Bra032296.1-P	Field mustard	cytosol, nucleus, plastid	67.36	74.62
Bra010843.1-P	Field mustard	nucleus	67.36	74.62
Zm00001d053625_P001	Maize	extracellular, plasma membrane	70.83	73.38
CDX99800	Canola	cytosol, nucleus, plastid	65.97	73.08
TraesCS6D01G168100.1	Wheat	cytosol, nucleus, plastid	70.14	72.66
TraesCS6B01G209900.1	Wheat	cytosol, nucleus, plastid	70.14	72.66
EES06481	Sorghum	cytosol, nucleus, plastid	70.83	72.34
TraesCS6A01G175200.1	Wheat	cytosol, nucleus, plastid	69.44	71.94
PGSC0003DMT400073472	Potato	cytosol	63.19	71.65
GSMUA_Achr7P09990_001	Banana	cytosol	63.19	71.09
GSMUA_Achr6P05270_001	Banana	cytosol	65.97	70.9
Solyc06g068050.2.1	Tomato	nucleus	62.5	70.87
Os02t0202500-01	Rice	nucleus	32.64	68.12
KRH34103	Soybean	plastid	59.72	65.15
TraesCS1D01G117000.1	Wheat	cytosol	60.42	64.93
TraesCS1B01G135500.1	Wheat	cytosol, nucleus, plastid	59.72	64.66
EES00222	Sorghum	cytosol, nucleus, plastid	65.97	64.63
TraesCS1A01G115600.1	Wheat	cytosol, nucleus, plastid	59.03	62.96
KRG92697	Soybean	plastid	56.94	62.12
TraesCS3B01G148300.1	Wheat	cytosol, nucleus, plastid	65.97	62.09
TraesCS3D01G130100.1	Wheat	cytosol, nucleus, plastid	66.67	61.94
TraesCS3A01G129200.1	Wheat	cytosol, nucleus, plastid	65.97	61.29
EES19123	Sorghum	nucleus	56.94	61.19
Os01t0173100-01	Rice	nucleus	64.58	61.18
HORVU7Hr1G084100.1	Barley	mitochondrion	70.14	60.12
KRG96999	Soybean	nucleus	52.78	58.91
KRH68751	Soybean	plastid	55.56	57.97
Zm00001d046401_P001	Maize	cytosol, nucleus, plasma membrane	36.11	52.0
HORVU1Hr1G025500.1	Barley	cytosol, nucleus, plastid	57.64	50.3
KRH77811	Soybean	cytosol	44.44	48.48
GSMUA_Achr7P10060_001	Banana	extracellular	34.72	43.86
Zm00001d039663_P005	Maize	nucleus, peroxisome, plastid	56.94	41.21
Zm00001d009798_P001	Maize	cytosol	51.39	40.22
Zm00001d008731_P001	Maize	nucleus, plasma membrane, vacuole	46.53	27.8

Protein Annotations

EntrezGene:100305539	MapMan:15.3.7.2.1	Gene3D:3.30.110.20	EMBL:ACUP02004928	InterPro:Alba-like_dom_sf	EMBL:BT089191
UniProt:C6SVJ8	InterPro:DNA/RNA-bd_Alba-like	EnsemblPlantsGene:GLYMA_08G211200	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR036882	EnsemblPlants:KRH44436	ProteinID:KRH44436	ProteinID:KRH44436.1	PFAM:PF01918	PIRSF:PIRSF030333
PANTHER:PTHR31947	PANTHER:PTHR31947:SF11	SUPFAM:SSF82704	InterPro:UCP030333_Alba	UniParc:UPI0001B15749	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:17053242..17055704

Molecular Weight (calculated)

15894.0 Da

IEP (calculated)

5.659

GRAVY (calculated)

-0.299

Length

144 amino acids

Sequence
(BLAST)

001: MLLFSHSHTT AMEAITEGVN NINISDSYKK NRIQVSNTKK PLFFYVNLAK RYMQQHNEVE LSALGMAIAT VVTVAEILKN NELAIEKKIT TSTVDIKDDS
101: RGRPVQKAKI EILLGKTEKF DELMAAAAAA AEDGENGDVE EHTA

Best Arabidopsis Sequence Match ( AT2G34160.1 )
(BLAST)

001: MEEITDGVNN MNLATDSQKK NRIQVSNTKK PLFFYVNLAK RYMQQYNDVE LSALGMAIAT VVTVTEILKN NGFAVEKKIM TSTVDIKDDA RGRPVQKAKI
101: EITLVKSEKF DELMAAANEE KEDAEAQVQN

Arabidopsis Description

Uncharacterized protein At2g34160 [Source:UniProtKB/Swiss-Prot;Acc:O22969]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.