Factsheet for Zm00001d053625_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06481	Sorghum	cytosol, nucleus, plastid	91.37	90.07
TraesCS6D01G168100.1	Wheat	cytosol, nucleus, plastid	86.33	86.33
TraesCS6B01G209900.1	Wheat	cytosol, nucleus, plastid	86.33	86.33
TraesCS6A01G175200.1	Wheat	cytosol, nucleus, plastid	85.61	85.61
VIT_09s0002g06460.t01	Wine grape	cytosol, nucleus, plastid	79.14	85.27
VIT_11s0016g05100.t01	Wine grape	nucleus	78.42	83.85
GSMUA_Achr6P05140_001	Banana	cytosol, nucleus, plastid	74.82	80.62
GSMUA_Achr6P00670_001	Banana	nucleus	72.66	79.53
GSMUA_Achr2P17110_001	Banana	cytosol, nucleus, plasma membrane	74.1	78.63
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	72.66	78.29
KRH09747	Soybean	cytosol, nucleus, plasma membrane	73.38	77.86
CDY17226	Canola	nucleus	72.66	77.69
KRH23562	Soybean	nucleus	74.1	77.44
GSMUA_Achr7P08310_001	Banana	cytosol	73.38	77.27
CDY63142	Canola	nucleus	71.94	76.92
Bra005449.1-P	Field mustard	nucleus	71.94	76.92
AT1G29250.1	Thale cress	cytosol, nucleus, plastid	71.94	76.92
Os02t0202500-01	Rice	nucleus	37.41	75.36
AT2G34160.1	Thale cress	cytosol	69.78	74.62
CDY15644	Canola	cytosol, endoplasmic reticulum, nucleus	69.78	74.62
Bra030127.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	69.78	74.62
CDY50785	Canola	cytosol, nucleus, plastid	69.06	73.85
CDY15643	Canola	cytosol, endoplasmic reticulum, nucleus	69.06	73.85
CDX94654	Canola	cytosol, endoplasmic reticulum, nucleus	69.06	73.85
Bra010843.1-P	Field mustard	nucleus	68.35	73.08
CDX90176	Canola	nucleus	68.35	73.08
Bra032296.1-P	Field mustard	cytosol, nucleus, plastid	68.35	73.08
CDY43326	Canola	cytosol, nucleus, plastid	67.63	72.31
CDX99800	Canola	cytosol, nucleus, plastid	66.91	71.54
KRH44436	Soybean	nucleus	73.38	70.83
Solyc06g068050.2.1	Tomato	nucleus	63.31	69.29
PGSC0003DMT400073472	Potato	cytosol	62.59	68.5
VIT_04s0023g02330.t01	Wine grape	cytosol	71.94	68.03
GSMUA_Achr7P09990_001	Banana	cytosol	62.59	67.97
GSMUA_Achr6P05270_001	Banana	cytosol	64.75	67.16
KRH47470	Soybean	nucleus	64.03	64.49
Zm00001d046401_P001	Maize	cytosol, nucleus, plasma membrane	35.97	50.0
GSMUA_Achr7P10060_001	Banana	extracellular	36.69	44.74
Zm00001d039663_P005	Maize	nucleus, peroxisome, plastid	61.15	42.71
Zm00001d009798_P001	Maize	cytosol	53.24	40.22
Zm00001d023639_P002	Maize	cytosol	53.24	36.27
Zm00001d008731_P001	Maize	nucleus, plasma membrane, vacuole	51.08	29.46

Protein Annotations

EntrezGene:100275927	MapMan:15.3.7.2.1	Gene3D:3.30.110.20	ProteinID:AQK59967.1	InterPro:Alba-like_dom_sf	UniProt:B6T175
EMBL:BT086706	InterPro:DNA/RNA-bd_Alba-like	EMBL:EU958740	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR036882	PFAM:PF01918	PIRSF:PIRSF030333	PANTHER:PTHR31947	PANTHER:PTHR31947:SF11	SUPFAM:SSF82704
InterPro:UCP030333_Alba	UniParc:UPI000182CA83	EnsemblPlantsGene:Zm00001d053625	EnsemblPlants:Zm00001d053625_P001	EnsemblPlants:Zm00001d053625_T001	SEG:seg

Description

Alba DNA/RNA-binding protein

Coordinates

chr4:+:237083050..237084813

Molecular Weight (calculated)

15030.1 Da

IEP (calculated)

5.810

GRAVY (calculated)

-0.194

Length

139 amino acids

Sequence
(BLAST)

001: MDEVTEAVNN LNISGVGAAG VAGAEGHKKN RIQVSNTKKP LFFYVNLAKR YMQLHNEVEL SALGMAIATV VTVAEILKNN GLAVAKSIMT STVDIKDETR
101: TRPIQKAKIE ILLGKTEKFD ELMAAAAEER EANGAEEQS

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.