Factsheet for Zm00001d009798_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19123	Sorghum	nucleus	50.0	68.66
GSMUA_Achr6P05140_001	Banana	cytosol, nucleus, plastid	41.3	58.91
KRH09747	Soybean	cytosol, nucleus, plasma membrane	41.85	58.78
KRH23562	Soybean	nucleus	41.85	57.89
VIT_11s0016g05100.t01	Wine grape	nucleus	40.76	57.69
GSMUA_Achr6P00670_001	Banana	nucleus	39.67	57.48
GSMUA_Achr2P17110_001	Banana	cytosol, nucleus, plasma membrane	40.76	57.25
GSMUA_Achr7P09990_001	Banana	cytosol	39.67	57.03
Solyc06g068050.2.1	Tomato	nucleus	39.13	56.69
PGSC0003DMT400073472	Potato	cytosol	39.13	56.69
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	39.67	56.59
VIT_09s0002g06460.t01	Wine grape	cytosol, nucleus, plastid	39.67	56.59
TraesCS1B01G135500.1	Wheat	cytosol, nucleus, plastid	40.76	56.39
TraesCS1A01G115600.1	Wheat	cytosol, nucleus, plastid	40.76	55.56
TraesCS1D01G117000.1	Wheat	cytosol	40.22	55.22
GSMUA_Achr6P05270_001	Banana	cytosol	40.22	55.22
CDY15644	Canola	cytosol, endoplasmic reticulum, nucleus	38.59	54.62
CDY17226	Canola	nucleus	38.59	54.62
CDY63142	Canola	nucleus	38.59	54.62
CDY15643	Canola	cytosol, endoplasmic reticulum, nucleus	38.59	54.62
CDX94654	Canola	cytosol, endoplasmic reticulum, nucleus	38.59	54.62
AT1G29250.1	Thale cress	cytosol, nucleus, plastid	38.59	54.62
Bra030127.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	38.59	54.62
Bra005449.1-P	Field mustard	nucleus	38.59	54.62
AT2G34160.1	Thale cress	cytosol	38.59	54.62
GSMUA_Achr7P08310_001	Banana	cytosol	39.13	54.55
CDY50785	Canola	cytosol, nucleus, plastid	38.04	53.85
CDY43326	Canola	cytosol, nucleus, plastid	38.04	53.85
CDX99800	Canola	cytosol, nucleus, plastid	38.04	53.85
Zm00001d053625_P001	Maize	extracellular, plasma membrane	40.22	53.24
CDX90176	Canola	nucleus	37.5	53.08
Bra032296.1-P	Field mustard	cytosol, nucleus, plastid	37.5	53.08
Bra010843.1-P	Field mustard	nucleus	37.5	53.08
KRH44436	Soybean	nucleus	40.22	51.39
VIT_04s0023g02330.t01	Wine grape	cytosol	38.59	48.3
KRH47470	Soybean	nucleus	35.33	47.1
HORVU1Hr1G025500.1	Barley	cytosol, nucleus, plastid	37.5	41.82
GSMUA_Achr7P10060_001	Banana	extracellular	22.83	36.84
Zm00001d039663_P005	Maize	nucleus, peroxisome, plastid	38.59	35.68
Zm00001d046401_P001	Maize	cytosol, nucleus, plasma membrane	19.02	35.0
Zm00001d023639_P002	Maize	cytosol	34.24	30.88
Zm00001d008731_P001	Maize	nucleus, plasma membrane, vacuole	28.8	21.99

Protein Annotations

EnsemblPlants:Zm00001d009798_P001	EnsemblPlants:Zm00001d009798_T001	EnsemblPlantsGene:Zm00001d009798	EntrezGene:103635458	Gene3D:3.30.110.20	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:Alba-like_dom_sf	InterPro:IPR036882	InterPro:UCP030333_Alba	PANTHER:PTHR31947
PANTHER:PTHR31947:SF11	PIRSF:PIRSF030333	ProteinID:AQK92736.1	SEG:seg	SUPFAM:SSF82704	UniParc:UPI0002209D5B
UniProt:K7UY78	MapMan:15.3.7.2.1	:	:	:	:

Description

Alba DNA/RNA-binding protein

Coordinates

chr8:+:81981674..81983148

Molecular Weight (calculated)

19473.0 Da

IEP (calculated)

6.545

GRAVY (calculated)

-0.276

Length

184 amino acids

Sequence
(BLAST)

001: MSGDTAAAVQ AGGDAQQAVG RNRIQVSSSK KPLFFYVNLA KRYMQHHDDD VELSALGLGP KSLSNLLAAI STAVTVAEIL KNNGLAVEKK VRTSTVDIKN
101: EISTRSIQKA KIEIVLGKTN KFDELMAAND GDGTAGDGVG KNDKFDELMA ANDGDGTAGG GNKQRFVIDF PTIFISSPLL DRSS

Best Arabidopsis Sequence Match ( AT2G34160.1 )
(BLAST)

001: MEEITDGVNN MNLATDSQKK NRIQVSNTKK PLFFYVNLAK RYMQQYNDVE LSALGMAIAT VVTVTEILKN NGFAVEKKIM TSTVDIKDDA RGRPVQKAKI
101: EITLVKSEKF DELMAAANEE KEDAEAQVQN

Arabidopsis Description

Uncharacterized protein At2g34160 [Source:UniProtKB/Swiss-Prot;Acc:O22969]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.