Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G135500.1 | Wheat | cytosol, nucleus, plastid | 97.76 | 98.5 |
| TraesCS1A01G115600.1 | Wheat | cytosol, nucleus, plastid | 97.76 | 97.04 |
| VIT_09s0002g06460.t01 | Wine grape | cytosol, nucleus, plastid | 65.67 | 68.22 |
| TraesCS7D01G348900.1 | Wheat | cytosol, nucleus, plastid | 66.42 | 67.42 |
| KRH09747 | Soybean | cytosol, nucleus, plasma membrane | 65.67 | 67.18 |
| GSMUA_Achr6P00670_001 | Banana | nucleus | 63.43 | 66.93 |
| VIT_11s0016g05100.t01 | Wine grape | nucleus | 64.93 | 66.92 |
| GSMUA_Achr2P17110_001 | Banana | cytosol, nucleus, plasma membrane | 64.93 | 66.41 |
| GSMUA_Achr6P05140_001 | Banana | cytosol, nucleus, plastid | 63.43 | 65.89 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 63.43 | 65.89 |
| KRH23562 | Soybean | nucleus | 64.93 | 65.41 |
| CDY50785 | Canola | cytosol, nucleus, plastid | 63.43 | 65.38 |
| AT1G29250.1 | Thale cress | cytosol, nucleus, plastid | 63.43 | 65.38 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 62.69 | 64.62 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 62.69 | 64.62 |
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 62.69 | 64.62 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 62.69 | 64.62 |
| CDX94654 | Canola | cytosol, endoplasmic reticulum, nucleus | 62.69 | 64.62 |
| Bra032296.1-P | Field mustard | cytosol, nucleus, plastid | 62.69 | 64.62 |
| Bra030127.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 62.69 | 64.62 |
| HORVU1Hr1G025500.1 | Barley | cytosol, nucleus, plastid | 79.1 | 64.24 |
| GSMUA_Achr7P08310_001 | Banana | cytosol | 62.69 | 63.64 |
| TraesCS6D01G168100.1 | Wheat | cytosol, nucleus, plastid | 65.67 | 63.31 |
| CDX90176 | Canola | nucleus | 61.19 | 63.08 |
| Bra010843.1-P | Field mustard | nucleus | 61.19 | 63.08 |
| GSMUA_Achr6P05270_001 | Banana | cytosol | 62.69 | 62.69 |
| AT2G34160.1 | Thale cress | cytosol | 60.45 | 62.31 |
| CDY63142 | Canola | nucleus | 60.45 | 62.31 |
| CDY17226 | Canola | nucleus | 60.45 | 62.31 |
| Bra005449.1-P | Field mustard | nucleus | 60.45 | 62.31 |
| EES19123 | Sorghum | nucleus | 61.94 | 61.94 |
| PGSC0003DMT400073472 | Potato | cytosol | 57.46 | 60.63 |
| Solyc06g068050.2.1 | Tomato | nucleus | 57.46 | 60.63 |
| KRH44436 | Soybean | nucleus | 64.93 | 60.42 |
| TraesCS3D01G130100.1 | Wheat | cytosol, nucleus, plastid | 69.4 | 60.0 |
| GSMUA_Achr7P09990_001 | Banana | cytosol | 56.72 | 59.38 |
| KRH47470 | Soybean | nucleus | 55.97 | 54.35 |
| VIT_04s0023g02330.t01 | Wine grape | cytosol | 58.21 | 53.06 |
| Zm00001d009798_P001 | Maize | cytosol | 55.22 | 40.22 |
| GSMUA_Achr7P10060_001 | Banana | extracellular | 30.6 | 35.96 |
| TraesCS3D01G432100.1 | Wheat | nucleus | 50.0 | 35.45 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G117000.1 | EnsemblPlantsGene:TraesCS1D01G117000 | Gene3D:3.30.110.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:Alba-like_dom_sf | InterPro:DNA/RNA-bd_Alba-like | InterPro:IPR036882 | InterPro:UCP030333_Alba | PANTHER:PTHR31947 | PANTHER:PTHR31947:SF11 |
| PFAM:PF01918 | PIRSF:PIRSF030333 | SEG:seg | SUPFAM:SSF82704 | MapMan:15.3.7.2.1 | : |
Description
No Description!
Coordinates
chr1D:-:112770731..112771758
Molecular Weight (calculated)
14482.1 Da
IEP (calculated)
5.012
GRAVY (calculated)
-0.410
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGDAAEAQR ARAANGGGGG GGSSNRIQVS NTKKPLFFYV NLAKRYMQQH GEVELSALGM AIATVVTVAE ILKNNGFAFE TRITTSTVEI KDEMRGRPIQ
101: KAKIEIVLRK SDKFDELMAT AAAEEAAEDE EEQT
101: KAKIEIVLRK SDKFDELMAT AAAEEAAEDE EEQT
001: MEEITEGVNN MNLAVDTQKK NRIQVSNTKK PLFFYVNLAK RYMQQYTDVE LSALGMAIAT VVTVAEILKN NGFAVEKKIM TSTVDIKDDS RGRPVQKAKI
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
Arabidopsis Description
Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9LP53]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.