Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G209900.1 | Wheat | cytosol, nucleus, plastid | 98.56 | 98.56 |
| TraesCS6D01G168100.1 | Wheat | cytosol, nucleus, plastid | 98.56 | 98.56 |
| EES06481 | Sorghum | cytosol, nucleus, plastid | 87.77 | 86.52 |
| Zm00001d053625_P001 | Maize | extracellular, plasma membrane | 85.61 | 85.61 |
| VIT_09s0002g06460.t01 | Wine grape | cytosol, nucleus, plastid | 76.98 | 82.95 |
| VIT_11s0016g05100.t01 | Wine grape | nucleus | 76.98 | 82.31 |
| TraesCS7A01G374500.1 | Wheat | nucleus | 77.7 | 81.82 |
| GSMUA_Achr6P05140_001 | Banana | cytosol, nucleus, plastid | 75.54 | 81.4 |
| GSMUA_Achr2P17110_001 | Banana | cytosol, nucleus, plasma membrane | 75.54 | 80.15 |
| GSMUA_Achr6P00670_001 | Banana | nucleus | 72.66 | 79.53 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 72.66 | 78.29 |
| Os02t0202500-01 | Rice | nucleus | 38.85 | 78.26 |
| GSMUA_Achr7P08310_001 | Banana | cytosol | 74.1 | 78.03 |
| KRH09747 | Soybean | cytosol, nucleus, plasma membrane | 72.66 | 77.1 |
| KRH23562 | Soybean | nucleus | 73.38 | 76.69 |
| AT1G29250.1 | Thale cress | cytosol, nucleus, plastid | 70.5 | 75.38 |
| CDY63142 | Canola | nucleus | 69.78 | 74.62 |
| CDY17226 | Canola | nucleus | 69.78 | 74.62 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 69.78 | 74.62 |
| Bra030127.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 69.78 | 74.62 |
| Bra005449.1-P | Field mustard | nucleus | 69.78 | 74.62 |
| CDY50785 | Canola | cytosol, nucleus, plastid | 69.06 | 73.85 |
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 69.06 | 73.85 |
| CDX94654 | Canola | cytosol, endoplasmic reticulum, nucleus | 69.06 | 73.85 |
| Bra032296.1-P | Field mustard | cytosol, nucleus, plastid | 68.35 | 73.08 |
| AT2G34160.1 | Thale cress | cytosol | 67.63 | 72.31 |
| CDX90176 | Canola | nucleus | 67.63 | 72.31 |
| Bra010843.1-P | Field mustard | nucleus | 67.63 | 72.31 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 66.91 | 71.54 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 66.91 | 71.54 |
| Solyc06g068050.2.1 | Tomato | nucleus | 64.03 | 70.08 |
| GSMUA_Achr7P09990_001 | Banana | cytosol | 64.03 | 69.53 |
| KRH44436 | Soybean | nucleus | 71.94 | 69.44 |
| PGSC0003DMT400073472 | Potato | cytosol | 63.31 | 69.29 |
| VIT_04s0023g02330.t01 | Wine grape | cytosol | 71.22 | 67.35 |
| GSMUA_Achr6P05270_001 | Banana | cytosol | 64.75 | 67.16 |
| TraesCS1A01G115600.1 | Wheat | cytosol, nucleus, plastid | 63.31 | 65.19 |
| KRH47470 | Soybean | nucleus | 62.59 | 63.04 |
| TraesCS3A01G129200.1 | Wheat | cytosol, nucleus, plastid | 62.59 | 56.13 |
| GSMUA_Achr7P10060_001 | Banana | extracellular | 35.25 | 42.98 |
| TraesCS3A01G439300.1 | Wheat | nucleus | 50.36 | 37.04 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G175200.1 | EnsemblPlantsGene:TraesCS6A01G175200 | Gene3D:3.30.110.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:Alba-like_dom_sf | InterPro:DNA/RNA-bd_Alba-like | InterPro:IPR036882 | InterPro:UCP030333_Alba | PANTHER:PTHR31947 | PANTHER:PTHR31947:SF11 |
| PFAM:PF01918 | PIRSF:PIRSF030333 | SEG:seg | SUPFAM:SSF82704 | MapMan:15.3.7.2.1 | : |
Description
No Description!
Coordinates
chr6A:-:190597383..190599801
Molecular Weight (calculated)
15203.3 Da
IEP (calculated)
4.894
GRAVY (calculated)
-0.290
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEVTEAVNN LTIGEGAAAT AGAEGHKKNR IQVSNTKKPL FFYVNLAKRY MQLHEEVELS ALGMAIATVV TVAEILKNNG LAVEKKIMTS TVDVKDDTRN
101: RPIQKVKIEI LIGKTEKFDE LMAAAAEERE AAGAEEEQS
101: RPIQKVKIEI LIGKTEKFDE LMAAAAEERE AAGAEEEQS
001: MEEITEGVNN MNLAVDTQKK NRIQVSNTKK PLFFYVNLAK RYMQQYTDVE LSALGMAIAT VVTVAEILKN NGFAVEKKIM TSTVDIKDDS RGRPVQKAKI
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
101: EITLAKSEKF DELMAAANEE KEAAEAQEQN
Arabidopsis Description
Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9LP53]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.