Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
nucleus: 28628250 |
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
msms PMID:
28628250
doi
LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G348900.1 | Wheat | cytosol, nucleus, plastid | 99.24 | 99.24 |
| TraesCS7B01G252900.1 | Wheat | cytosol | 98.48 | 98.48 |
| Os06t0602600-01 | Rice | nucleus | 90.91 | 90.91 |
| EER88613 | Sorghum | cytosol, nucleus, plastid | 84.85 | 86.82 |
| GSMUA_Achr6P05140_001 | Banana | cytosol, nucleus, plastid | 84.09 | 86.05 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 83.33 | 85.27 |
| VIT_11s0016g05100.t01 | Wine grape | nucleus | 82.58 | 83.85 |
| GSMUA_Achr7P08310_001 | Banana | cytosol | 83.33 | 83.33 |
| VIT_09s0002g06460.t01 | Wine grape | cytosol, nucleus, plastid | 81.06 | 82.95 |
| GSMUA_Achr6P00670_001 | Banana | nucleus | 78.79 | 81.89 |
| GSMUA_Achr2P17110_001 | Banana | cytosol, nucleus, plasma membrane | 80.3 | 80.92 |
| KRH23562 | Soybean | nucleus | 78.79 | 78.2 |
| KRH09747 | Soybean | cytosol, nucleus, plasma membrane | 77.27 | 77.86 |
| TraesCS6A01G175200.1 | Wheat | cytosol, nucleus, plastid | 81.82 | 77.7 |
| HORVU7Hr1G084100.1 | Barley | mitochondrion | 98.48 | 77.38 |
| AT1G29250.1 | Thale cress | cytosol, nucleus, plastid | 75.76 | 76.92 |
| CDY63142 | Canola | nucleus | 75.0 | 76.15 |
| CDY17226 | Canola | nucleus | 75.0 | 76.15 |
| Bra005449.1-P | Field mustard | nucleus | 75.0 | 76.15 |
| CDY50785 | Canola | cytosol, nucleus, plastid | 73.48 | 74.62 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 73.48 | 74.62 |
| Bra030127.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 73.48 | 74.62 |
| Solyc06g068050.2.1 | Tomato | nucleus | 71.21 | 74.02 |
| AT2G34160.1 | Thale cress | cytosol | 72.73 | 73.85 |
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 72.73 | 73.85 |
| Bra032296.1-P | Field mustard | cytosol, nucleus, plastid | 72.73 | 73.85 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 72.73 | 73.85 |
| CDX94654 | Canola | cytosol, endoplasmic reticulum, nucleus | 72.73 | 73.85 |
| Bra010843.1-P | Field mustard | nucleus | 71.97 | 73.08 |
| CDX90176 | Canola | nucleus | 71.97 | 73.08 |
| GSMUA_Achr7P09990_001 | Banana | cytosol | 70.45 | 72.66 |
| PGSC0003DMT400073472 | Potato | cytosol | 69.7 | 72.44 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 70.45 | 71.54 |
| GSMUA_Achr6P05270_001 | Banana | cytosol | 71.97 | 70.9 |
| KRH44436 | Soybean | nucleus | 75.76 | 69.44 |
| VIT_04s0023g02330.t01 | Wine grape | cytosol | 76.52 | 68.71 |
| TraesCS1A01G115600.1 | Wheat | cytosol, nucleus, plastid | 67.42 | 65.93 |
| KRH47470 | Soybean | nucleus | 65.91 | 63.04 |
| TraesCS3A01G129200.1 | Wheat | cytosol, nucleus, plastid | 72.73 | 61.94 |
| Zm00001d046401_P001 | Maize | cytosol, nucleus, plasma membrane | 40.15 | 53.0 |
| GSMUA_Achr7P10060_001 | Banana | extracellular | 40.15 | 46.49 |
| TraesCS3A01G439300.1 | Wheat | nucleus | 56.06 | 39.15 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G374500.1 | EnsemblPlantsGene:TraesCS7A01G374500 | Gene3D:3.30.110.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:Alba-like_dom_sf | InterPro:DNA/RNA-bd_Alba-like | InterPro:IPR036882 | InterPro:UCP030333_Alba | PANTHER:PTHR31947 | PANTHER:PTHR31947:SF12 |
| PFAM:PF01918 | PIRSF:PIRSF030333 | SEG:seg | SUPFAM:SSF82704 | MapMan:15.3.7.2.1 | : |
Description
No Description!
Coordinates
chr7A:-:547335701..547337413
Molecular Weight (calculated)
14635.6 Da
IEP (calculated)
4.879
GRAVY (calculated)
-0.367
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEVTEGVKN LAVTEPHKKN RIQVSNTKKP LFFYVNLAKR YMQMHNEVEL SALGMAIATV VTVAEILKNN GLAVEKKIMT STVDVNDESR GRPMQKAKIE
101: IVLGKTENFD ELMAAAAEER EVAAAEEGEE QG
101: IVLGKTENFD ELMAAAAEER EVAAAEEGEE QG
001: MEEITDGVNN MNLATDSQKK NRIQVSNTKK PLFFYVNLAK RYMQQYNDVE LSALGMAIAT VVTVTEILKN NGFAVEKKIM TSTVDIKDDA RGRPVQKAKI
101: EITLVKSEKF DELMAAANEE KEDAEAQVQN
101: EITLVKSEKF DELMAAANEE KEDAEAQVQN
Arabidopsis Description
Uncharacterized protein At2g34160 [Source:UniProtKB/Swiss-Prot;Acc:O22969]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.