CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96999	Soybean	nucleus	77.54	82.95
KRG92697	Soybean	plastid	65.22	68.18
KRH34103	Soybean	plastid	64.49	67.42
KRH09747	Soybean	cytosol, nucleus, plasma membrane	56.52	59.54
KRH23562	Soybean	nucleus	57.25	59.4
Bra036129.1-P	Field mustard	plastid	50.72	57.85
CDY00026	Canola	cytosol, nucleus, plastid	50.72	56.91
CDY57017	Canola	cytosol, nucleus, plastid	50.72	56.91
KRH44436	Soybean	nucleus	57.97	55.56
GSMUA_Achr4P13630_001	Banana	cytosol	52.17	53.73
CDY40664	Canola	cytosol	62.32	53.42
Bra001110.1-P	Field mustard	cytosol	62.32	52.44
CDX74179	Canola	cytosol	62.32	52.44
CDY41887	Canola	cytosol	57.25	51.97
CDY50744	Canola	cytosol	57.25	51.97
Bra040393.1-P	Field mustard	cytosol	57.25	51.97
AT3G04620.1	Thale cress	cytosol	60.87	51.22
KRH47470	Soybean	nucleus	50.72	50.72
GSMUA_Achr4P06650_001	Banana	cytosol	53.62	50.0
CDY21118	Canola	cytosol	56.52	50.0
Solyc01g097050.2.1	Tomato	unclear	59.42	49.7
CDX86203	Canola	cytosol	55.8	49.68
Bra010003.1-P	Field mustard	cytosol	55.8	49.68
PGSC0003DMT400070712	Potato	plastid	57.97	49.38
CDY30010	Canola	cytosol	55.07	47.8
KRH77811	Soybean	cytosol	42.75	44.7
Os12t0489300-01	Rice	plasma membrane	52.17	42.6
EES17034	Sorghum	nucleus	52.17	37.89
HORVU3Hr1G095800.1	Barley	nucleus	51.45	37.57
TraesCS3A01G439300.1	Wheat	nucleus	51.45	37.57
TraesCS3B01G473200.1	Wheat	nucleus	51.45	37.57
TraesCS3D01G432100.1	Wheat	nucleus	50.72	37.04
Zm00001d023639_P002	Maize	cytosol	52.17	35.29
CDX79500	Canola	cytosol	37.68	29.38
CDY28657	Canola	mitochondrion	42.03	29.15
CDY68615	Canola	nucleus, plastid	40.58	26.17
CDY53532	Canola	nucleus	41.3	24.15

Protein Annotations

EntrezGene:100799167	MapMan:15.3.7.2.1	Gene3D:3.30.110.20	EMBL:ACUP02002123	InterPro:Alba-like_dom_sf	InterPro:DNA/RNA-bd_Alba-like
EnsemblPlantsGene:GLYMA_03G248100	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	UniProt:I1JRN9	InterPro:IPR036882
EnsemblPlants:KRH68751	ProteinID:KRH68751	ProteinID:KRH68751.1	PFAM:PF01918	PIRSF:PIRSF030333	PANTHER:PTHR31947
PANTHER:PTHR31947:SF5	SUPFAM:SSF82704	InterPro:UCP030333_Alba	UniParc:UPI00023377C6	:	:

Description

hypothetical protein

Coordinates

chr3:+:44467490..44469173

Molecular Weight (calculated)

15212.4 Da

IEP (calculated)

10.235

GRAVY (calculated)

-0.404

Length

138 amino acids

Sequence
(BLAST)

001: MPTTVAVSVP QNQNTNHGVE SPKKNKIQVS NTKKPLFFYV NLAKRYIQQR NEVVLSALGM GITTVVTIAE ILKNNGLAIE KKVSTSSVTM KDETKGRLVQ
101: KAKIEIVLEK TEKFDSLTAV ANTESKVVAA DDDNHEKK

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.