Factsheet for GSMUA_Achr4P06650_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P13630_001	Banana	cytosol	64.19	70.9
KRH34103	Soybean	plastid	56.08	62.88
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	54.73	62.79
GSMUA_Achr6P00670_001	Banana	nucleus	52.7	61.42
GSMUA_Achr6P05140_001	Banana	cytosol, nucleus, plastid	53.38	61.24
CDY00026	Canola	cytosol, nucleus, plastid	50.0	60.16
GSMUA_Achr7P08310_001	Banana	cytosol	53.38	59.85
GSMUA_Achr2P17110_001	Banana	cytosol, nucleus, plasma membrane	52.7	59.54
KRG92697	Soybean	plastid	52.7	59.09
Bra036129.1-P	Field mustard	plastid	47.97	58.68
GSMUA_Achr7P09990_001	Banana	cytosol	50.68	58.59
CDY57017	Canola	cytosol, nucleus, plastid	48.65	58.54
GSMUA_Achr6P05270_001	Banana	cytosol	50.68	55.97
KRG96999	Soybean	nucleus	48.65	55.81
Os12t0489300-01	Rice	plasma membrane	62.16	54.44
KRH68751	Soybean	plastid	50.0	53.62
CDY40664	Canola	cytosol	57.43	52.8
CDY41887	Canola	cytosol	54.05	52.63
CDY50744	Canola	cytosol	54.05	52.63
Bra040393.1-P	Field mustard	cytosol	54.05	52.63
Bra001110.1-P	Field mustard	cytosol	56.76	51.22
CDX74179	Canola	cytosol	56.76	51.22
AT3G04620.1	Thale cress	cytosol	56.76	51.22
CDY21118	Canola	cytosol	53.38	50.64
CDX86203	Canola	cytosol	52.7	50.32
Bra010003.1-P	Field mustard	cytosol	52.7	50.32
EES17034	Sorghum	nucleus	63.51	49.47
PGSC0003DMT400070712	Potato	plastid	54.05	49.38
CDY30010	Canola	cytosol	52.7	49.06
VIT_05s0020g04890.t01	Wine grape	cytosol	46.62	47.92
Solyc01g097050.2.1	Tomato	unclear	53.38	47.88
TraesCS3B01G473200.1	Wheat	nucleus	60.81	47.62
HORVU3Hr1G095800.1	Barley	nucleus	60.81	47.62
TraesCS3A01G439300.1	Wheat	nucleus	60.81	47.62
TraesCS3D01G432100.1	Wheat	nucleus	60.14	47.09
Zm00001d023639_P002	Maize	cytosol	62.84	45.59
KRH77811	Soybean	cytosol	39.19	43.94
GSMUA_Achr7P10060_001	Banana	extracellular	27.7	35.96
CDY28657	Canola	mitochondrion	39.19	29.15
CDX79500	Canola	cytosol	33.11	27.68
CDY68615	Canola	nucleus, plastid	37.16	25.7
CDY53532	Canola	nucleus	37.16	23.31

Protein Annotations

MapMan:15.3.7.2.1	Gene3D:3.30.110.20	InterPro:Alba-like_dom_sf	InterPro:DNA/RNA-bd_Alba-like	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr4G06650_001	EnsemblPlants:GSMUA_Achr4P06650_001	EnsemblPlants:GSMUA_Achr4T06650_001	InterPro:IPR036882	UniProt:M0SLN2
PFAM:PD010497	PFAM:PF01918	PIRSF:PIRSF030333	PANTHER:PTHR31947	PANTHER:PTHR31947:SF5	SUPFAM:SSF82704
InterPro:UCP030333_Alba	UniParc:UPI000296CBA6	SEG:seg	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G06650_001]

Coordinates

chr4:+:4996897..4998458

Molecular Weight (calculated)

16007.3 Da

IEP (calculated)

10.070

GRAVY (calculated)

-0.224

Length

148 amino acids

Sequence
(BLAST)

001: MATATATATA TATAVVNEPE AAVVNEPEAA EVVAVGRSKR NRIQVSTNKK PLFFYVNLAK RYMQQHNEIE LSALGMAIGT VVTVAEILKN NGLATEKKIQ
101: TSTVGTKDEA KGRLVRKAKI EILLGKTENF NHLVSTNKVV RQATEAEE

Best Arabidopsis Sequence Match ( AT3G04620.1 )
(BLAST)

001: MAMEVATPAP APIPSERNIV LAPATTTTTA TVETHKKNRI QVSNTKKPLF FYVNLAKRYI QQHNEVELSA LGMAITTVVT ISEILKNNGL ATEKKVLTST
101: VGMKDETKGK MVQKAKIEIV LGKSDKFDSL VPPVTNGKTP EEEASAETEA SVEAQEEVAA ATEV

Arabidopsis Description

Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SR12]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.