Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
22908117
nucleus: 25464976 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g065980.2.1 | Tomato | nucleus | 99.22 | 99.22 |
| PGSC0003DMT400052712 | Potato | cytosol | 99.22 | 99.22 |
| CDY50785 | Canola | cytosol, nucleus, plastid | 71.88 | 70.77 |
| Solyc06g068050.2.1 | Tomato | nucleus | 69.53 | 70.08 |
| CDY15643 | Canola | cytosol, endoplasmic reticulum, nucleus | 71.09 | 70.0 |
| CDY15644 | Canola | cytosol, endoplasmic reticulum, nucleus | 71.09 | 70.0 |
| AT1G29250.1 | Thale cress | cytosol, nucleus, plastid | 71.09 | 70.0 |
| CDX94654 | Canola | cytosol, endoplasmic reticulum, nucleus | 71.09 | 70.0 |
| CDX90176 | Canola | nucleus | 71.09 | 70.0 |
| Bra032296.1-P | Field mustard | cytosol, nucleus, plastid | 71.09 | 70.0 |
| Bra030127.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 71.09 | 70.0 |
| Bra010843.1-P | Field mustard | nucleus | 71.09 | 70.0 |
| CDX99800 | Canola | cytosol, nucleus, plastid | 70.31 | 69.23 |
| CDY43326 | Canola | cytosol, nucleus, plastid | 70.31 | 69.23 |
| AT2G34160.1 | Thale cress | cytosol | 70.31 | 69.23 |
| CDY17226 | Canola | nucleus | 69.53 | 68.46 |
| CDY63142 | Canola | nucleus | 69.53 | 68.46 |
| Bra005449.1-P | Field mustard | nucleus | 69.53 | 68.46 |
| Solyc01g097050.2.1 | Tomato | unclear | 60.94 | 47.27 |
Protein Annotations
| EnsemblPlants:Solyc06g066100.2.1 | EnsemblPlantsGene:Solyc06g066100.2 | Gene3D:3.30.110.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:Alba-like_dom_sf | InterPro:DNA/RNA-bd_Alba-like | InterPro:IPR036882 | InterPro:UCP030333_Alba | ncoils:Coil | PANTHER:PTHR31947 |
| PANTHER:PTHR31947:SF11 | PFAM:PF01918 | PIRSF:PIRSF030333 | SUPFAM:SSF82704 | UniParc:UPI0002765B9F | UniProt:K4C7N8 |
| MapMan:15.3.7.2.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:41437095..41440659
Molecular Weight (calculated)
14430.3 Da
IEP (calculated)
5.328
GRAVY (calculated)
-0.548
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGITEGVNK MSVSETQKKN RIQVSNTKKS LFFYVNLSKR YMQQYNEVEL SALGMAISTV VTIAEILKNN GFAVEKKIRT LTVDMRDEPG ARPIPKAKIE
101: IVLGKTEKFD ELMAAEAEQN GDNEEQQN
101: IVLGKTEKFD ELMAAEAEQN GDNEEQQN
001: MEEITDGVNN MNLATDSQKK NRIQVSNTKK PLFFYVNLAK RYMQQYNDVE LSALGMAIAT VVTVTEILKN NGFAVEKKIM TSTVDIKDDA RGRPVQKAKI
101: EITLVKSEKF DELMAAANEE KEDAEAQVQN
101: EITLVKSEKF DELMAAANEE KEDAEAQVQN
Arabidopsis Description
Uncharacterized protein At2g34160 [Source:UniProtKB/Swiss-Prot;Acc:O22969]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.