CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91493
KRG92697
KRG95339
KRG96999
KRG97883
KRG97899
KRH11210
KRH11866
KRH14509
KRH21040
KRH24006
KRH26168
KRH27971
KRH28995
KRH29310
KRH30985
KRH30995
KRH32716
KRH34103
KRH35335
KRH36887
KRH39569
KRH41728
KRH41811
KRH42252
KRH49954
KRH55075
KRH58370
KRH60516
KRH67023
KRH68073
KRH68751
KRH73622
KRH74384
KRH74904
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18290.1	KRH14509	AT1G06590.1	20706207
AT2G18290.1	KRH73622	AT1G06590.1	20706207
AT2G18290.1	KRH39569	AT1G32310.1	20706207
AT2G18290.1	KRH74384	AT1G32310.1	20706207
AT2G18290.1	KRH26168	AT1G78770.1	20706207
AT2G18290.1	KRH55075	AT1G78770.1	20706207
AT2G18290.1	KRG97883	AT2G04660.1	20706207
AT2G18290.1	KRH30995	AT2G04660.1	20706207
AT2G18290.1	KRH32716	AT2G04660.1	20706207
AT2G18290.1	KRH74904	AT2G04660.1	20706207
AT2G18290.1	KRH41728	AT2G20000.1	17944809
AT2G18290.1	KRH41728	AT2G20000.1	20706207
AT2G18290.1	KRH11210	AT2G39090.1	20706207
AT2G18290.1	KRH21040	AT2G39090.1	20706207
AT2G18290.1	KRG95339	AT2G42260.1	20706207
AT2G18290.1	KRH67023	AT2G42260.1	20706207
AT2G18290.1	KRG92697	AT3G04620.1	20706207
AT2G18290.1	KRG96999	AT3G04620.1	20706207
AT2G18290.1	KRH34103	AT3G04620.1	20706207
AT2G18290.1	KRH68751	AT3G04620.1	20706207
AT2G18290.1	KRH24006	AT3G48150.1	20706207
AT2G18290.1	KRH27971	AT3G48150.1	20706207
AT2G18290.1	KRH29310	AT3G48150.1	20706207
AT2G18290.1	KRH77487	AT3G48150.1	20706207
AT2G18290.1	KRH11866	AT3G48750.1	20706207
AT2G18290.1	KRH36887	AT3G48750.1	20706207
AT2G18290.1	KRH42252	AT3G48750.1	20706207
AT2G18290.1	KRH58370	AT3G48750.1	20706207
AT2G18290.1	KRH41811	AT3G56150.1	20706207
AT2G18290.1	KRH60516	AT3G56150.1	20706207
AT2G18290.1	KRH68073	AT3G56150.1	20706207
AT2G18290.1	KRG95339	AT3G57860.1	20706207
AT2G18290.1	KRH67023	AT3G57860.1	20706207
AT2G18290.1	KRH28995	AT4G19210.1	20706207
AT2G18290.1	KRH49954	AT4G21530.1	20706207
AT2G18290.1	KRG91493	AT4G25550.1	20706207
AT2G18290.1	KRH35335	AT4G25550.1	20706207
AT2G18290.1	KRG97899	AT5G13840.1	20706207
AT2G18290.1	KRH30985	AT5G13840.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99106	Soybean	nucleus	30.34	44.26
KRH69898	Soybean	cytosol	33.71	31.25
KRH08242	Soybean	cytosol	33.15	30.73
VIT_04s0023g01940.t01	Wine grape	cytosol	30.9	28.65
Solyc02g062680.2.1	Tomato	cytosol	29.78	27.75
GSMUA_Achr1P03050_001	Banana	cytosol	30.34	27.69
AT2G18290.1	Thale cress	nucleus	29.78	27.6
PGSC0003DMT400040024	Potato	cytosol	29.21	27.23
EES19889	Sorghum	cytoskeleton, cytosol, nucleus	30.34	26.87
Zm00001d038881_P001	Maize	cytoskeleton, cytosol, nucleus	29.78	26.77
Zm00001d009440_P001	Maize	cytoskeleton, cytosol, nucleus	29.21	25.87
CDY29224	Canola	cytosol	27.53	25.52
CDY20922	Canola	cytosol	27.53	25.52
Os05t0579800-01	Rice	cytosol	28.65	25.37
Bra024475.1-P	Field mustard	cytosol	26.97	25.0
CDY25160	Canola	nucleus	18.54	22.92
HORVU1Hr1G091550.1	Barley	cytosol, nucleus	29.21	22.81
TraesCS1D01G323600.1	Wheat	nucleus	18.54	21.85
TraesCS3B01G195200.1	Wheat	nucleus	18.54	21.85
TraesCS5A01G358300.1	Wheat	nucleus	18.54	21.85
TraesCS7A01G155100.1	Wheat	nucleus	18.54	21.85
TraesCS6A01G073800.1	Wheat	nucleus	17.98	21.19
HORVU5Hr1G110350.1	Barley	cytosol, nucleus, plastid	5.62	9.35

Protein Annotations

MapMan:13.3.4.1.1.3.2	Gene3D:2.60.120.260	EMBL:ACUP02004396	InterPro:APC10/Doc1	InterPro:APC_su10/DOC_dom	EnsemblPlantsGene:GLYMA_07G162200
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005680	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0019538	GO:GO:0031145	GO:GO:0061630
GO:GO:0070979	GO:GO:1904668	InterPro:Galactose-bd-like_sf	InterPro:IPR004939	InterPro:IPR008979	UniProt:K7L240
EnsemblPlants:KRH49548	ProteinID:KRH49548	ProteinID:KRH49548.1	PFAM:PF03256	PANTHER:PTHR12936	SUPFAM:SSF49785
TMHMM:TMhelix	UniParc:UPI0002969AAA	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:21427586..21428274

Molecular Weight (calculated)

20104.8 Da

IEP (calculated)

10.739

GRAVY (calculated)

0.035

Length

178 amino acids

Sequence
(BLAST)

001: MRSKTLLHSL FSFSSHLKSA GNRSVDTHIA PHSFRYCQKS LARTHRTSYR RKVEENPTLL LELCVSKKPY TALGTVVGAQ SSKLSTLPVN KVLIKLLGHF
101: VHLANHIKVS IRMVMWGFIL LWQLIVLYVV FKLDESYTPS KVSIRAGDGF HNLKEIKTVE LVKATGWVYL SLSGADPR

Best Arabidopsis Sequence Match ( AT2G18290.1 )
(BLAST)

001: MATESSESEE EGKISGGNYK LIIDDDLREM GKNAAWSVSS CKPGNGVTTL RDDNLETYWQ SDGLQPHLIN IQFQKKVKLQ LVVLYVDFKL DESYTPSKIS
101: IRAGDGFHNL KEIKSVELVK PTGWVCLSLS GTDPRETFVN TFMLQIAILS NHLNGRDTHI RQIKVYGPRP NPIPHQPFQF TSMEFLTYST LR

Arabidopsis Description

APC10Anaphase-promoting complex subunit 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.