Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- peroxisome 1
- nucleus 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G083840.8 | Barley | cytosol | 36.45 | 7.46 |
| KRH30995 | Soybean | cytosol | 60.75 | 7.35 |
| KRG97883 | Soybean | cytosol | 59.81 | 7.23 |
| Solyc05g007750.2.1 | Tomato | cytosol | 45.79 | 5.55 |
| PGSC0003DMT400047444 | Potato | cytosol | 45.79 | 5.54 |
| CDY04835 | Canola | cytosol | 42.06 | 5.28 |
| Bra028905.1-P | Field mustard | cytosol | 42.06 | 5.26 |
| VIT_01s0026g02730.t01 | Wine grape | cytosol | 42.99 | 5.21 |
| KXG20781 | Sorghum | cytosol | 41.12 | 5.12 |
| AT2G04660.1 | Thale cress | cytosol | 41.12 | 5.09 |
| GSMUA_Achr3P19380_001 | Banana | cytosol | 40.19 | 4.91 |
| Zm00001d014685_P009 | Maize | cytosol | 39.25 | 4.88 |
| Os04t0484800-01 | Rice | cytosol | 38.32 | 4.75 |
| TraesCS2A01G321000.1 | Wheat | cytosol | 36.45 | 4.53 |
| TraesCS2B01G361700.1 | Wheat | cytosol | 36.45 | 4.53 |
| TraesCS2D01G341700.1 | Wheat | cytosol | 36.45 | 4.53 |
| CDY30292 | Canola | cytosol | 33.64 | 4.25 |
| Bra025616.1-P | Field mustard | cytosol | 31.78 | 4.08 |
| CDY30835 | Canola | cytosol | 31.78 | 4.06 |
| HORVU0Hr1G004870.2 | Barley | cytosol | 7.48 | 3.43 |
| HORVU0Hr1G004980.2 | Barley | cytosol | 0.93 | 0.29 |
| KRH32716 | Soybean | golgi | 0.0 | 0.0 |
| HORVU0Hr1G004910.1 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| EMBL:ACUP02000088 | EnsemblPlants:KRH74904 | EnsemblPlantsGene:GLYMA_01G051000 | Gene3D:1.10.10.10 | InterPro:APC_su2_C | InterPro:IPR036388 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | PFAM:PF08672 | ProteinID:KRH74904 | ProteinID:KRH74904.1 | SEG:seg |
| SUPFAM:SSF46785 | UniParc:UPI0002961C97 | UniProt:K7K1W6 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr1:-:6037670..6039017
Molecular Weight (calculated)
11917.5 Da
IEP (calculated)
5.115
GRAVY (calculated)
0.090
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETSKNGAS TGCAQELLGG EEEEEKSVVS VENQLRKEMT VYEKFILGML TNFGSMALDR IHNTRFLRIG IAVWNDFDVF LRIPTCICFC CCGSILAHCQ
101: CITQTKA
101: CITQTKA
001: MEALGSSDCN LEILETLSDD AIQEITESYD GFFTTVESLI AGTGDSLVED EFVSHVYCLC KYGLDSLVRD HFLRSLEQAF EKGGASSFWQ HFDAYSEKKH
101: HNYGEEIQIV LCKALEEISI EKQYHEKCLS IVVHALQSFK EQSSDDRQNS DTERVHLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKERLE ELSAIMDGDG
201: IEEQEDDCMD LDEKLRYKNG EMDVDEGCSQ GKRLGHDKLV KNIGKVVRDL RSIGFTSMAE NAYASAIFLL LKAKVHDLAG DDYRTSVLES IKEWIQTVPL
301: QFLNALLSYL GDSVSYGTTS SGLTSPLACC PSPSFSRVVT PSEGIVRWKL RLEYFAYETL QDLRIAKLFE IIVDYPESSP AIEDLKQCLE YTGQHSKLVE
401: SFISSLKYRL LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVGEPIRD YLRGRKDTIK CIVTMLTDGS GGNANGSGNP GDSLLEELMR DEESQENVGF
501: DDDFHTDDKQ AWINASRWEP DPVEADPLKG SLSQRKVDIL GMLVDIIGSK EQLVNEYRVM LAEKLLNKTD YDIDTEIRTV ELLKIHFGEA SMQRCEIMLN
601: DLIDSKRVNT NIKKASQTGA ELRENELSVD TLTSTILSTN FWPPIQDEPL ELPGPVDKLL SDYANRYHEI KTPRKLLWKK NLGTVKLELQ FEDRAMQFTV
701: SPTHAAIIMQ FQEKKSWTYK DLAEVIGIPI DALNRRVNFW ISKGVLREST GANSNSSVLT LVESITDSGK NEGEELLTGE EEGETSIASV EDQLRKEMTI
801: YEKFIMGMLT NFGSMALERI HNTLKMFCVA DPSYDKSLQQ LQSFLSGLVS EEKLEFRDGM YLLKK
101: HNYGEEIQIV LCKALEEISI EKQYHEKCLS IVVHALQSFK EQSSDDRQNS DTERVHLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKERLE ELSAIMDGDG
201: IEEQEDDCMD LDEKLRYKNG EMDVDEGCSQ GKRLGHDKLV KNIGKVVRDL RSIGFTSMAE NAYASAIFLL LKAKVHDLAG DDYRTSVLES IKEWIQTVPL
301: QFLNALLSYL GDSVSYGTTS SGLTSPLACC PSPSFSRVVT PSEGIVRWKL RLEYFAYETL QDLRIAKLFE IIVDYPESSP AIEDLKQCLE YTGQHSKLVE
401: SFISSLKYRL LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVGEPIRD YLRGRKDTIK CIVTMLTDGS GGNANGSGNP GDSLLEELMR DEESQENVGF
501: DDDFHTDDKQ AWINASRWEP DPVEADPLKG SLSQRKVDIL GMLVDIIGSK EQLVNEYRVM LAEKLLNKTD YDIDTEIRTV ELLKIHFGEA SMQRCEIMLN
601: DLIDSKRVNT NIKKASQTGA ELRENELSVD TLTSTILSTN FWPPIQDEPL ELPGPVDKLL SDYANRYHEI KTPRKLLWKK NLGTVKLELQ FEDRAMQFTV
701: SPTHAAIIMQ FQEKKSWTYK DLAEVIGIPI DALNRRVNFW ISKGVLREST GANSNSSVLT LVESITDSGK NEGEELLTGE EEGETSIASV EDQLRKEMTI
801: YEKFIMGMLT NFGSMALERI HNTLKMFCVA DPSYDKSLQQ LQSFLSGLVS EEKLEFRDGM YLLKK
Arabidopsis Description
APC2APC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VYA9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.