Factsheet for Os04t0484800-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0205300-01
Os02t0656300-01
Os02t0785900-00
Os03t0236966-00
Os05t0149900-01
Os06t0600100-01
Os06t0600301-00
Os06t0622500-00
Os06t0679100-00
Os12t0626300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04660.1	Os12t0626300-01	AT1G06590.1	20706207
AT2G04660.1	Os03t0236966-00	AT1G78770.1	20706207
AT2G04660.1	Os06t0622500-00	AT2G20000.1	17944809
AT2G04660.1	Os06t0622500-00	AT2G20000.1	20706207
AT2G04660.1	Os05t0149900-01	AT2G39090.1	20706207
AT2G04660.1	Os06t0622500-00	AT3G16320.1	20706207
AT2G04660.1	Os02t0656300-01	AT3G48150.1	14508008
AT2G04660.1	Os06t0679100-00	AT3G48150.1	14508008
AT2G04660.1	Os02t0656300-01	AT3G48150.1	20706207
AT2G04660.1	Os06t0679100-00	AT3G48150.1	20706207
AT2G04660.1	Os02t0785900-00	AT4G21530.1	20706207
AT2G04660.1	Os02t0205300-01	AT5G19990.1	20706207
AT2G04660.1	Os06t0600100-01	AT5G19990.1	20706207
AT2G04660.1	Os06t0600301-00	AT5G19990.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G083840.8	Barley	cytosol	53.59	88.53
KXG20781	Sorghum	cytosol	85.65	86.15
TraesCS2D01G341700.1	Wheat	cytosol	85.65	86.05
TraesCS2A01G321000.1	Wheat	cytosol	85.65	86.05
TraesCS2B01G361700.1	Wheat	cytosol	85.42	85.81
Zm00001d014685_P009	Maize	cytosol	84.38	84.77
HORVU0Hr1G004870.2	Barley	cytosol	21.64	80.26
HORVU0Hr1G004980.2	Barley	cytosol	30.21	76.09
HORVU0Hr1G004910.1	Barley	cytosol	10.76	75.0
GSMUA_Achr3P19380_001	Banana	cytosol	71.53	70.63
KRH32716	Soybean	golgi	23.03	69.58
VIT_01s0026g02730.t01	Wine grape	cytosol	69.1	67.61
AT2G04660.1	Thale cress	cytosol	63.66	63.58
KRG97883	Soybean	cytosol	65.05	63.5
KRH30995	Soybean	cytosol	64.47	63.01
PGSC0003DMT400047444	Potato	cytosol	64.0	62.56
Solyc05g007750.2.1	Tomato	cytosol	63.77	62.4
Bra028905.1-P	Field mustard	cytosol	61.69	62.27
CDY04835	Canola	cytosol	61.34	62.13
Bra025616.1-P	Field mustard	cytosol	59.38	61.58
CDY30835	Canola	cytosol	59.49	61.34
CDY30292	Canola	cytosol	59.61	60.8
KRH74904	Soybean	cytosol, extracellular, peroxisome	4.75	38.32

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:13.3.4.1.1.3.1	EntrezGene:4336204	EMBL:AK068962
InterPro:APC_su2_C	ProteinID:BAF15041.2	ProteinID:BAS89779.1	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005680	GO:GO:0005819	GO:GO:0005856	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009561
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	GO:GO:0061630
InterPro:IPR016158	InterPro:IPR036388	EnsemblPlantsGene:Os04g0484800	EnsemblPlants:Os04t0484800-01	PFAM:PF00888	PFAM:PF08672
PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF5	UniProt:Q0JC96	SMART:SM00182	SMART:SM01013
SUPFAM:SSF46785	SUPFAM:SSF75632	UniParc:UPI000188AD5E	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_015635799.1
SEG:seg	:	:	:	:	:

Description

ANAPHASE PROMOTING COMPLEX 2Cullin family protein. (Os04t0484800-01)

Coordinates

chr4:+:24229248..24236905

Molecular Weight (calculated)

97285.6 Da

IEP (calculated)

4.786

GRAVY (calculated)

-0.323

Length

864 amino acids

Sequence
(BLAST)

001: MQLVDDADGA LDSWARFCDL SDELFGGAGD LSAGPRLAPV VADLCARGLA ELLRDQFIRS LEGIFRSNAV KKFWQQFHPY CNSSAVERIK FCVQENWPED
101: ILSKALEDIC LEKNYQEKCV LALVHSLQSY EDRSPHRKSK ALDCSSSLMP RYQLMVSSVL LTTLPLSFPE ILNVYFKKKL EELNIMMAGL DGSDPFDNHD
201: LFERNSTSAW HSEMDIDGQE PGISESRNLV KNIGKVVRDL RYLGFTSMTE DSYSSAIIWL LKSKVHELAG DDYRIPVLGC VKKWIQAVPL KFLHAQLTYL
301: GDSLDNESGS SGLKSPLASR PSSFPGIGVP SEALVRWHMR LEYFAYETLQ DLRIGKLFEI IVDYPESSPA IEDLKQCLEY TGQHSKLVDS FISSLRYRLL
401: TAGASTNDIL HQYVSTIKAL RTIDPTGVFL EAVGEPIRDY LRGRKDTIKC IVTMLTDGSG GNANGTGNAG DNLLEELNRD AENQENVDYD DHTNIDEKQA
501: WLNAESWEPD PVEADPLKGS RNRRKIDILG LIVSIIGSKD QLVNEYRVML AEKLLNKSDF DIDSDIRTLE LLKIHFGESS MQKCEIMLND LIDSKRTNSN
601: IKTSLSKTSQ TVGTVQEETE LSHEVLDATI ISSNFWPPIQ TEDLTVPASV DQLLSDYAKR FHQIKTPRKL LWKKNLGTVK LELQFEDRSM QFTVAPVHAA
701: IIMQFQEKPS WTSKTLATAI GVPVDSLNRK ISFWTSKGVL TESVGPDADD PTFTVVDSTS DFNKNSTVNQ LSERFQITEE EGESSIASVE EQLRKEMTVY
801: EKFIIGMLTN FGSMTLDRIH NTLKMFCIAE PSYDKSLQQL QSFLSGLVSD EKLEMRDGSY LLRK

Best Arabidopsis Sequence Match ( AT2G04660.1 )
(BLAST)

001: MEALGSSDCN LEILETLSDD AIQEITESYD GFFTTVESLI AGTGDSLVED EFVSHVYCLC KYGLDSLVRD HFLRSLEQAF EKGGASSFWQ HFDAYSEKKH
101: HNYGEEIQIV LCKALEEISI EKQYHEKCLS IVVHALQSFK EQSSDDRQNS DTERVHLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKERLE ELSAIMDGDG
201: IEEQEDDCMD LDEKLRYKNG EMDVDEGCSQ GKRLGHDKLV KNIGKVVRDL RSIGFTSMAE NAYASAIFLL LKAKVHDLAG DDYRTSVLES IKEWIQTVPL
301: QFLNALLSYL GDSVSYGTTS SGLTSPLACC PSPSFSRVVT PSEGIVRWKL RLEYFAYETL QDLRIAKLFE IIVDYPESSP AIEDLKQCLE YTGQHSKLVE
401: SFISSLKYRL LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVGEPIRD YLRGRKDTIK CIVTMLTDGS GGNANGSGNP GDSLLEELMR DEESQENVGF
501: DDDFHTDDKQ AWINASRWEP DPVEADPLKG SLSQRKVDIL GMLVDIIGSK EQLVNEYRVM LAEKLLNKTD YDIDTEIRTV ELLKIHFGEA SMQRCEIMLN
601: DLIDSKRVNT NIKKASQTGA ELRENELSVD TLTSTILSTN FWPPIQDEPL ELPGPVDKLL SDYANRYHEI KTPRKLLWKK NLGTVKLELQ FEDRAMQFTV
701: SPTHAAIIMQ FQEKKSWTYK DLAEVIGIPI DALNRRVNFW ISKGVLREST GANSNSSVLT LVESITDSGK NEGEELLTGE EEGETSIASV EDQLRKEMTI
801: YEKFIMGMLT NFGSMALERI HNTLKMFCVA DPSYDKSLQQ LQSFLSGLVS EEKLEFRDGM YLLKK

Arabidopsis Description

APC2APC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VYA9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.