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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • cytosol 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0823300-00
Os01t0873100-01
Os02t0639900-01
Os02t0785900-00
Os03t0206900-01
Os03t0236966-00
Os03t0244950-00
Os03t0816200-01
Os04t0484800-01
Os04t0485000-01
Os04t0530600-01
Os04t0589200-01
Os04t0626900-01
Os05t0430800-01
Os05t0477300-03
Os06t0716100-01
Os07t0264800-01
Os08t0426866-00
Os08t0548400-00
Os08t0556600-01
Os08t0560900-01
Os09t0513700-01
Os11t0217300-01
Os12t0580700-01
Os12t0626300-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G48150.1 Os08t0560900-01 AT1G03130.1 21798944
AT3G48150.1 Os12t0626300-01 AT1G06590.1 20706207
AT3G48150.1 Os03t0206900-01 AT1G49850.1 21798944
AT3G48150.1 Os12t0580700-01 AT1G49850.1 21798944
AT3G48150.1 Os07t0264800-01 AT1G72030.1 21798944
AT3G48150.1 Os03t0236966-00 AT1G78770.1 20706207
AT3G48150.1 Os04t0484800-01 AT2G04660.1 14508008
AT3G48150.1 Os11t0217300-01 AT2G05830.1 20706207
AT3G48150.1 Os03t0244950-00 AT2G17880.1 21798944
AT3G48150.1 Os06t0716100-01 AT2G17880.1 21798944
AT3G48150.1 Os08t0548400-00 AT2G17880.1 21798944
AT3G48150.1 Os01t0823300-00 AT2G40590.1 21798944
AT3G48150.1 Os03t0816200-01 AT2G40590.1 21798944
AT3G48150.1 Os05t0477300-03 AT2G40590.1 21798944
AT3G48150.1 Os09t0513700-01 AT2G43370.1 21798944
AT3G48150.1 Os04t0626900-01 AT3G15160.1 21798944
AT3G48150.1 Os02t0639900-01 AT3G15360.1 21798944
AT3G48150.1 Os04t0530600-01 AT3G15360.1 21798944
AT3G48150.1 Os04t0589200-01 AT3G17668.1 21798944
AT3G48150.1 Os08t0556600-01 AT3G62790.1 21798944
AT3G48150.1 Os02t0785900-00 AT4G21530.1 20706207
AT3G48150.1 Os04t0485000-01 AT4G24820.1 20706207
AT3G48150.1 Os01t0873100-01 AT4G34740.1 21798944
AT3G48150.1 Os05t0430800-01 AT4G34740.1 21798944
AT3G48150.1 Os08t0426866-00 AT5G16560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY70805 Canola nucleus 52.81 31.23
KRH29310 Soybean cytosol 48.31 26.88
Os02t0656300-01 Rice cytosol 73.03 21.78
CDY58069 Canola nucleus 52.81 21.08
TraesCS6A01G251400.1 Wheat cytosol 68.54 20.37
Zm00001d017475_P002 Maize cytosol 67.98 20.2
TraesCS6D01G233200.1 Wheat cytosol 67.98 20.2
TraesCS6B01G273900.1 Wheat cytosol 67.98 20.2
EES07517 Sorghum cytosol 66.85 19.83
HORVU0Hr1G027080.4 Barley plastid 66.29 19.67
CDY36901 Canola cytosol 53.37 18.96
CDY44976 Canola cytosol 53.37 18.81
CDY58070 Canola cytosol 52.25 18.79
HORVU6Hr1G062870.1 Barley cytosol, plastid 66.85 18.34
PGSC0003DMT400063189 Potato cytosol 51.69 16.91
Bra018081.1-P Field mustard cytosol 53.93 16.58
VIT_07s0130g00490.t01 Wine grape cytosol 52.81 16.29
GSMUA_Achr11P... Banana cytosol 55.06 16.23
KRH27971 Soybean nucleus 52.25 16.12
Bra033769.1-P Field mustard nucleus 52.25 16.09
AT3G48150.1 Thale cress cytosol 52.25 16.06
VIT_07s0031g02330.t01 Wine grape cytosol 51.69 15.94
KRH77487 Soybean nucleus 51.69 15.92
Solyc03g113740.2.1 Tomato cytosol, mitochondrion 50.56 15.62
KRH24006 Soybean cytosol 48.88 14.77
Os06t0622500-00 Rice cytosol 5.62 2.63
Protein Annotations
EnsemblPlants:Os06t0679100-00EnsemblPlantsGene:Os06g0679100Gene3D:1.25.40.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR011990InterPro:TPR-like_helical_dom_sfncoils:CoilPANTHER:PTHR12558PANTHER:PTHR12558:SF10ProteinID:BAS99130.1
SEG:segUniParc:UPI000393A8AFUniProt:A0A0P0WZY5MapMan:35.1::
Description
Similar to Anaphase-promoting complex subunit 8-like protein. (Os06t0679100-00)
Coordinates
chr6:+:28256745..28259996
Molecular Weight (calculated)
19950.1 Da
IEP (calculated)
8.284
GRAVY (calculated)
-0.053
Length
178 amino acids
Sequence
(BLAST)
001: MSGLIGTCSP RPNSTAASTA APRTSCAARP AARPCSFAAM PFELEGSLGK SNAVNQELVA LERELATHRR TGAIDSFCLY LYGIVLRDKG SEALARTVLV
101: ESVNSYPWNW SAWLELQSLC TSSDILNNLN LKNHWMKDFF LASAHLELKM HEEALKRYER LMGVFRCTNR LLIYWLMC
Best Arabidopsis Sequence Match ( AT3G48150.2 )
(BLAST)
001: MLRDQVSKKS LFLRYYALYL AGEKRKEEEM IELEGPLGKS DAINRELVSL ERDLSALRRT GAIDSFGLYL YGVVLKEKGN ESLARASLVE SVNSYPWNWS
101: AWSELQSLCT SIEILNSLNL NNHWMKEFFL GNAYQELRMH TESLAKYEYL QGIFSFSNYI QAQTAKAQYS LREFDQVEIM FEELLRNDPY RVEDMDLYSN
201: VLYAKEACAA LSYLAHKVFL TDKYRPESCC IIGNYYSLKG QHEKAVMYFR RALKLNKKYL SAWTLMGHEY VEMKNTPAAI DAYRRAVDIN PTDYRAWYGL
301: GQAYEMMGMP FYALHYFRKS IFFLPNDSRL WIAMAKCYQT EQLYMLEEAI KCYKRAVNCT DTEGIALNQL AKLHQKLGRN EEAAYYFEKD LERMDAEGLE
401: GPNMFEALVF LATHFKNHKK FEEAEVYCTR LLDYSGPEKE KAKSLLRGIR MAQTGFPSMD LEHFPI
Arabidopsis Description
APC8Anaphase-promoting complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9STS3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.