Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- vacuole 1
- cytosol 1
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
26035336
plastid: 27992503 |
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0225100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G40590.1 | Os01t0225100-01 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0823300-00 | Rice | nucleus | 91.18 | 93.23 |
| EES19692 | Sorghum | cytosol, nucleus, plastid | 80.88 | 81.48 |
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 69.12 | 75.81 |
| Zm00001d010614_P007 | Maize | cytosol, mitochondrion, nucleus | 80.88 | 73.83 |
| KRH53763 | Soybean | nucleus | 69.12 | 72.87 |
| Solyc04g008810.2.1 | Tomato | nucleus | 68.38 | 72.66 |
| PGSC0003DMT400065105 | Potato | cytosol | 68.38 | 72.66 |
| KRH72901 | Soybean | nucleus | 69.12 | 72.31 |
| KRH64187 | Soybean | nucleus | 68.38 | 72.09 |
| KRH57998 | Soybean | nucleus | 68.38 | 72.09 |
| KRH04512 | Soybean | nucleus | 68.38 | 72.09 |
| Solyc06g007470.2.1 | Tomato | nucleus | 66.91 | 71.65 |
| PGSC0003DMT400053000 | Potato | cytosol | 66.91 | 71.65 |
| AT3G56340.1 | Thale cress | cytosol | 68.38 | 71.54 |
| KRH17252 | Soybean | nucleus | 68.38 | 71.54 |
| CDX67642 | Canola | cytosol | 69.85 | 70.9 |
| CDY68398 | Canola | cytosol | 69.85 | 70.9 |
| CDY25697 | Canola | cytosol | 67.65 | 70.77 |
| AT2G40590.1 | Thale cress | cytosol | 67.65 | 70.23 |
| Bra007238.1-P | Field mustard | cytosol | 68.38 | 69.4 |
| AT2G40510.1 | Thale cress | cytosol | 67.65 | 69.17 |
| CDX72145 | Canola | cytosol | 67.65 | 68.66 |
| CDY27223 | Canola | cytosol, mitochondrion | 68.38 | 67.39 |
| PGSC0003DMT400059492 | Potato | cytosol | 50.74 | 65.71 |
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 65.44 | 64.96 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 69.12 | 62.67 |
| KRH06932 | Soybean | cytosol | 47.06 | 60.38 |
| Bra014697.1-P | Field mustard | cytosol | 67.65 | 60.13 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 64.71 | 59.86 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 66.18 | 57.32 |
| CDY07599 | Canola | plastid | 69.12 | 56.97 |
| CDY24898 | Canola | cytosol, plastid | 69.12 | 56.97 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 56.62 | 56.62 |
| Os03t0816200-01 | Rice | cytosol | 29.41 | 56.34 |
| CDY06976 | Canola | cytosol | 68.38 | 53.14 |
| CDY50450 | Canola | mitochondrion | 68.38 | 52.54 |
| CDX75988 | Canola | cytosol | 67.65 | 51.98 |
| PGSC0003DMT400062735 | Potato | cytosol | 36.76 | 47.62 |
| Bra003237.1-P | Field mustard | cytosol, nucleus, peroxisome | 68.38 | 32.75 |
Protein Annotations
| MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | EntrezGene:4339104 | EMBL:AK061933 | EMBL:AK098982 | EMBL:AK119683 |
| EMBL:AK119797 | ProteinID:BAF17754.1 | ProteinID:BAS94542.1 | ProteinID:EEE64093.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022627 |
| InterPro:IPR038551 | EnsemblPlantsGene:Os05g0477300 | EnsemblPlants:Os05t0477300-03 | PFAM:PF01283 | ScanProsite:PS00733 | PANTHER:PTHR12538 |
| PANTHER:PTHR12538:SF1 | UniProt:Q0DHB9 | InterPro:Ribosomal_S26e | InterPro:Ribosomal_S26e_sf | UniParc:UPI0000E12538 | RefSeq:XP_015640325.1 |
| SEG:seg | : | : | : | : | : |
Description
Ribosomal protein S26e domain containing protein. (Os05t0477300-03)
Coordinates
chr5:-:23483080..23485770
Molecular Weight (calculated)
15162.4 Da
IEP (calculated)
11.583
GRAVY (calculated)
-0.900
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MTFKRRNGGR NKHGRGHVKY IRCSNCAKCC PKDKAIKRFQ VRNIVEQAAI RDVQEACVHD GYVLPKLYAK VHHCVSCAIH AHIVRVRSRE NRRDRRPPER
101: FRRREDRPTG PRPGGAGGPG APAAAGPGGP PNVART
101: FRRREDRPTG PRPGGAGGPG APAAAGPGGP PNVART
001: MTFKRRNGGR NKHNRGHVKP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
Arabidopsis Description
RPS26C40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VFW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.