Factsheet for Os01t0823300-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0225100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40590.1	Os01t0225100-01	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0477300-03	Rice	nucleus, plastid	93.23	91.18
VIT_06s0004g07940.t01	Wine grape	cytosol	72.93	78.23
HORVU3Hr1G081220.1	Barley	cytosol	60.9	75.7
AT3G56340.1	Thale cress	cytosol	72.18	73.85
KRH53763	Soybean	nucleus	71.43	73.64
Solyc04g008810.2.1	Tomato	nucleus	70.68	73.44
PGSC0003DMT400065105	Potato	cytosol	70.68	73.44
KRH72901	Soybean	nucleus	71.43	73.08
KRH17252	Soybean	nucleus	71.43	73.08
KRH64187	Soybean	nucleus	70.68	72.87
KRH57998	Soybean	nucleus	70.68	72.87
KRH04512	Soybean	nucleus	70.68	72.87
Solyc06g007470.2.1	Tomato	nucleus	69.17	72.44
PGSC0003DMT400053000	Potato	cytosol	69.17	72.44
CDY25697	Canola	cytosol	70.68	72.31
AT2G40590.1	Thale cress	cytosol	70.68	71.76
AT2G40510.1	Thale cress	cytosol	71.43	71.43
Bra007238.1-P	Field mustard	cytosol	71.43	70.9
CDX67642	Canola	cytosol	71.43	70.9
CDY68398	Canola	cytosol	71.43	70.9
CDX72145	Canola	cytosol	70.68	70.15
CDY27223	Canola	cytosol, mitochondrion	71.43	68.84
GSMUA_Achr3P17860_001	Banana	mitochondrion	68.42	66.42
PGSC0003DMT400059492	Potato	cytosol	51.88	65.71
VIT_13s0067g02700.t01	Wine grape	plastid	72.18	64.0
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	69.17	62.59
KRH06932	Soybean	cytosol	49.62	62.26
Bra014697.1-P	Field mustard	cytosol	70.68	61.44
TraesCS3D01G338700.1	Wheat	cytosol	65.41	61.27
GSMUA_Achr6P23430_001	Banana	plastid	69.92	59.24
CDY24898	Canola	cytosol, plastid	72.18	58.18
CDY07599	Canola	plastid	72.18	58.18
TraesCS3A01G344900.1	Wheat	cytosol	63.91	57.05
GSMUA_Achr6P15550_001	Banana	cytosol	57.89	56.62
Os03t0816200-01	Rice	cytosol	30.08	56.34
CDY06976	Canola	cytosol	71.43	54.29
CDY50450	Canola	mitochondrion	71.43	53.67
CDX75988	Canola	cytosol	70.68	53.11
PGSC0003DMT400062735	Potato	cytosol	39.1	49.52
TraesCS3B01G377000.1	Wheat	nucleus	54.89	48.03
HORVU3Hr1G081210.2	Barley	cytosol, nucleus	48.12	47.06
TraesCS3D01G338900.1	Wheat	cytosol, nucleus, plastid	53.38	44.1
TraesCS3D01G338800.1	Wheat	cytosol, mitochondrion, nucleus	52.63	43.48
Bra003237.1-P	Field mustard	cytosol, nucleus, peroxisome	71.43	33.45

Protein Annotations

MapMan:17.1.3.1.27	Gene3D:3.30.1740.20	EntrezGene:4327570	ProteinID:BAD73505.1	ProteinID:BAD87076.1	ProteinID:BAF06572.1
ProteinID:BAS74989.1	EMBL:D38011	ProteinID:EAZ13982.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	InterPro:IPR038551
EnsemblPlantsGene:Os01g0823300	EnsemblPlants:Os01t0823300-00	UniProt:P49216	PFAM:PF01283	ScanProsite:PS00733	PANTHER:PTHR12538
PANTHER:PTHR12538:SF1	InterPro:Ribosomal_S26e	InterPro:Ribosomal_S26e_sf	UniParc:UPI00000AB7F9	RefSeq:XP_015622447.1	SEG:seg

Description

RPS26Similar to Ribosomal protein S26. (Os01t0823300-00)

Coordinates

chr1:+:35153705..35155694

Molecular Weight (calculated)

14992.2 Da

IEP (calculated)

11.583

GRAVY (calculated)

-0.907

Length

133 amino acids

Sequence
(BLAST)

001: MTFKRRNGGR NKHGRGHVKY IRCSNCAKCC PKDKAIKRFQ VRNIVEQAAI RDVQEACVHD GYVLPKLYAK VHHCVSCAIH AHIVRVRSRE NRRDRRPPER
101: FRRREDRPQG PRPGGGAPAP GGAAAPAPNV ART

Best Arabidopsis Sequence Match ( AT3G56340.1 )
(BLAST)

001: MTFKRRNGGR NKHNRGHVKP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA

Arabidopsis Description

RPS26C40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VFW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.