Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50450 | Canola | mitochondrion | 96.05 | 96.05 |
| CDY25697 | Canola | cytosol | 70.06 | 95.38 |
| AT3G56340.1 | Thale cress | cytosol | 68.93 | 93.85 |
| CDX72145 | Canola | cytosol | 70.62 | 93.28 |
| CDY27223 | Canola | cytosol, mitochondrion | 71.75 | 92.03 |
| CDX67642 | Canola | cytosol | 69.49 | 91.79 |
| CDY68398 | Canola | cytosol | 69.49 | 91.79 |
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 59.89 | 85.48 |
| Bra014697.1-P | Field mustard | cytosol | 72.88 | 84.31 |
| KRH64187 | Soybean | nucleus | 60.45 | 82.95 |
| KRH53763 | Soybean | nucleus | 59.89 | 82.17 |
| KRH17252 | Soybean | nucleus | 59.89 | 81.54 |
| KRH57998 | Soybean | nucleus | 59.32 | 81.4 |
| KRH04512 | Soybean | nucleus | 59.32 | 81.4 |
| KRH72901 | Soybean | nucleus | 59.32 | 80.77 |
| Solyc06g007470.2.1 | Tomato | nucleus | 57.63 | 80.31 |
| PGSC0003DMT400053000 | Potato | cytosol | 57.63 | 80.31 |
| Solyc04g008810.2.1 | Tomato | nucleus | 57.06 | 78.91 |
| PGSC0003DMT400065105 | Potato | cytosol | 57.06 | 78.91 |
| CDY07599 | Canola | plastid | 71.19 | 76.36 |
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 58.19 | 75.18 |
| CDY24898 | Canola | cytosol, plastid | 69.49 | 74.55 |
| PGSC0003DMT400059492 | Potato | cytosol | 43.5 | 73.33 |
| Zm00001d012992_P002 | Maize | mitochondrion, plasma membrane | 54.24 | 72.73 |
| CDY06976 | Canola | cytosol | 71.19 | 72.0 |
| Os01t0823300-00 | Rice | nucleus | 53.11 | 70.68 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 59.89 | 70.67 |
| KRH06932 | Soybean | cytosol | 41.81 | 69.81 |
| HORVU3Hr1G081220.1 | Barley | cytosol | 41.24 | 68.22 |
| EES19692 | Sorghum | cytosol, nucleus, plastid | 51.98 | 68.15 |
| Os05t0477300-03 | Rice | nucleus, plastid | 51.98 | 67.65 |
| TraesCS5A01G469300.1 | Wheat | golgi | 52.54 | 66.91 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 55.37 | 66.67 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 58.19 | 65.61 |
| HORVU5Hr1G111820.2 | Barley | cytosol, nucleus | 53.67 | 65.07 |
| Zm00001d010614_P007 | Maize | cytosol, mitochondrion, nucleus | 53.67 | 63.76 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 48.59 | 63.24 |
| OQU90753 | Sorghum | plastid | 55.93 | 63.06 |
| TraesCS5B01G481800.1 | Wheat | nucleus | 54.24 | 61.54 |
| TraesCS3D01G338700.1 | Wheat | cytosol | 46.33 | 57.75 |
| PGSC0003DMT400062735 | Potato | cytosol | 32.77 | 55.24 |
| TraesCS3A01G344900.1 | Wheat | cytosol | 46.33 | 55.03 |
| TraesCS3B01G377000.1 | Wheat | nucleus | 40.11 | 46.71 |
| HORVU3Hr1G081210.2 | Barley | cytosol, nucleus | 35.03 | 45.59 |
| Zm00001d034609_P001 | Maize | cytosol, nucleus, plasma membrane | 50.28 | 44.06 |
| TraesCS3D01G338900.1 | Wheat | cytosol, nucleus, plastid | 38.42 | 42.24 |
| TraesCS3D01G338800.1 | Wheat | cytosol, mitochondrion, nucleus | 37.85 | 41.61 |
| Os03t0816200-01 | Rice | cytosol | 16.38 | 40.85 |
| HORVU4Hr1G034100.2 | Barley | cytosol | 33.33 | 38.56 |
| CDX67643 | Canola | cytosol | 7.91 | 8.64 |
Protein Annotations
| MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | GO:A0A078CLP2 | EnsemblPlants:CDX75988 | ProteinID:CDX75988 | ProteinID:CDX75988.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00126199001 | InterPro:IPR038551 | PFAM:PF01283 | ScanProsite:PS00733 |
| PANTHER:PTHR12538 | PANTHER:PTHR12538:SF6 | InterPro:Ribosomal_S26e | InterPro:Ribosomal_S26e_sf | UniParc:UPI0004EDDCCC | SEG:seg |
Description
BnaA04g02520D
Coordinates
chrLK031806:-:38775..40176
Molecular Weight (calculated)
19715.9 Da
IEP (calculated)
11.141
GRAVY (calculated)
-0.566
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIMGKENVA TRFSCVHGLR EHALVRGFYC GEHVSSTSAI NLGLWMIHTF KRRNGGRNKH NRGHVNPIRC SNCGKCCPKD KAIKRFLVRN IVEQAAIRDV
101: QEASVYDGYT LPKLYAKMQY CVSCAIHSHV VRVRSSTNRR VRTPPPRFAR RKEDAPKPGQ PGQAPRPAGG APAAPRA
101: QEASVYDGYT LPKLYAKMQY CVSCAIHSHV VRVRSSTNRR VRTPPPRFAR RKEDAPKPGQ PGQAPRPAGG APAAPRA
001: MTFKRRNGGR NKHNRGHVNP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV
101: FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV
Arabidopsis Description
RPS26B40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VTX1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.