Factsheet for HORVU4Hr1G034100.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G030600.8

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40590.1	HORVU3Hr1G030600.8	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G111820.2	Barley	cytosol, nucleus	45.1	47.26
VIT_06s0004g07940.t01	Wine grape	cytosol	37.91	46.77
Os03t0816200-01	Rice	cytosol	21.57	46.48
HORVU3Hr1G081220.1	Barley	cytosol	32.03	45.79
PGSC0003DMT400059492	Potato	cytosol	31.37	45.71
Solyc06g007470.2.1	Tomato	nucleus	37.25	44.88
PGSC0003DMT400053000	Potato	cytosol	37.25	44.88
KRH17252	Soybean	nucleus	37.91	44.62
CDY25697	Canola	cytosol	37.91	44.62
KRH57998	Soybean	nucleus	37.25	44.19
Bra007238.1-P	Field mustard	cytosol	38.56	44.03
CDY68398	Canola	cytosol	38.56	44.03
CDX72145	Canola	cytosol	38.56	44.03
CDX67642	Canola	cytosol	38.56	44.03
KRH72901	Soybean	nucleus	37.25	43.85
AT3G56340.1	Thale cress	cytosol	37.25	43.85
GSMUA_Achr3P17860_001	Banana	mitochondrion	39.22	43.8
PGSC0003DMT400065105	Potato	cytosol	36.6	43.75
Solyc04g008810.2.1	Tomato	nucleus	36.6	43.75
AT2G40590.1	Thale cress	cytosol	37.25	43.51
KRH04512	Soybean	nucleus	36.6	43.41
KRH53763	Soybean	nucleus	36.6	43.41
KRH64187	Soybean	nucleus	36.6	43.41
AT2G40510.1	Thale cress	cytosol	37.25	42.86
CDY27223	Canola	cytosol, mitochondrion	38.56	42.75
KRH06932	Soybean	cytosol	29.41	42.45
PGSC0003DMT400062735	Potato	cytosol	28.76	41.9
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	39.87	41.5
Bra014697.1-P	Field mustard	cytosol	39.22	39.22
GSMUA_Achr6P15550_001	Banana	cytosol	34.64	38.97
VIT_13s0067g02700.t01	Wine grape	plastid	37.25	38.0
GSMUA_Achr6P23430_001	Banana	plastid	38.56	37.58
CDY07599	Canola	plastid	38.56	35.76
CDY24898	Canola	cytosol, plastid	37.91	35.15
CDY50450	Canola	mitochondrion	39.22	33.9
CDX75988	Canola	cytosol	38.56	33.33
Zm00001d034609_P001	Maize	cytosol, nucleus, plasma membrane	43.14	32.67
CDY06976	Canola	cytosol	37.25	32.57
HORVU3Hr1G081210.2	Barley	cytosol, nucleus	26.14	29.41
Bra003237.1-P	Field mustard	cytosol, nucleus, peroxisome	38.56	20.77

Protein Annotations

MapMan:17.1.3.1.27	Gene3D:3.30.1740.20	UniProt:A0A287NRR6	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU4Hr1G034100
EnsemblPlants:HORVU4Hr1G034100.2	InterPro:IPR038551	PFAM:PF01283	ScanProsite:PS00733	PANTHER:PTHR12538	PANTHER:PTHR12538:SF1
InterPro:Ribosomal_S26e	InterPro:Ribosomal_S26e_sf	UniParc:UPI000B478561	:	:	:

Description

40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A287NRR6]

Coordinates

chrchr4H:+:243261098..243264131

Molecular Weight (calculated)

16830.5 Da

IEP (calculated)

10.216

GRAVY (calculated)

-0.219

Length

153 amino acids

Sequence
(BLAST)

001: MQRWIRMPGC AGDDARRPLG PGTGRCTLQP PIGTSAEATN AGTSLLPRPP RKNYDKAIKR FLVRNIVEQA AVRYVQEACL HDGYVLPKLY AKVHHCVSCA
101: IHAHIVCVCP RENKRNREPR SASSAGATVE AYGRLFHMTR VGAQFAPIVI LSV

Best Arabidopsis Sequence Match ( AT3G45245.1 )
(BLAST)

001: MERMWATFML ALIILLTTSI QAKGNEKGND IAGAPSPTLA PQSENGLLPN PASCLADVKT IPNCVKAVKR FKLRNVTKKC CVILLYLPED CFGYLFPVRW
101: IYRILLKIAC KILGHI

Arabidopsis Description

ECA1 gametogenesis related family protein [Source:UniProtKB/TrEMBL;Acc:A8MQR5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.