Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- vacuole 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400010646 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G40590.1 | PGSC0003DMT400010646 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g007470.2.1 | Tomato | nucleus | 83.81 | 69.29 |
| PGSC0003DMT400053000 | Potato | cytosol | 83.81 | 69.29 |
| PGSC0003DMT400065105 | Potato | cytosol | 83.81 | 68.75 |
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 77.14 | 65.32 |
| KRH64187 | Soybean | nucleus | 78.1 | 63.57 |
| KRH57998 | Soybean | nucleus | 78.1 | 63.57 |
| KRH53763 | Soybean | nucleus | 78.1 | 63.57 |
| KRH17252 | Soybean | nucleus | 78.1 | 63.08 |
| KRH72901 | Soybean | nucleus | 78.1 | 63.08 |
| KRH04512 | Soybean | nucleus | 77.14 | 62.79 |
| CDY25697 | Canola | cytosol | 74.29 | 60.0 |
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 78.1 | 59.85 |
| AT3G56340.1 | Thale cress | cytosol | 73.33 | 59.23 |
| Bra007238.1-P | Field mustard | cytosol | 74.29 | 58.21 |
| CDX72145 | Canola | cytosol | 74.29 | 58.21 |
| AT2G40590.1 | Thale cress | cytosol | 72.38 | 58.02 |
| CDY68398 | Canola | cytosol | 73.33 | 57.46 |
| CDX67642 | Canola | cytosol | 73.33 | 57.46 |
| PGSC0003DMT400062735 | Potato | cytosol | 57.14 | 57.14 |
| AT2G40510.1 | Thale cress | cytosol | 72.38 | 57.14 |
| HORVU3Hr1G081220.1 | Barley | cytosol | 58.1 | 57.01 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 73.33 | 56.62 |
| KRH06932 | Soybean | cytosol | 57.14 | 56.6 |
| CDY27223 | Canola | cytosol, mitochondrion | 74.29 | 56.52 |
| Zm00001d012992_P002 | Maize | mitochondrion, plasma membrane | 69.52 | 55.3 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 77.14 | 55.1 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 78.1 | 54.67 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 79.05 | 52.87 |
| TraesCS5A01G469300.1 | Wheat | golgi | 69.52 | 52.52 |
| Os01t0823300-00 | Rice | nucleus | 65.71 | 51.88 |
| EES19692 | Sorghum | cytosol, nucleus, plastid | 66.67 | 51.85 |
| Os05t0477300-03 | Rice | nucleus, plastid | 65.71 | 50.74 |
| Bra014697.1-P | Field mustard | cytosol | 73.33 | 50.33 |
| HORVU5Hr1G111820.2 | Barley | cytosol, nucleus | 68.57 | 49.32 |
| CDY24898 | Canola | cytosol, plastid | 74.29 | 47.27 |
| CDY07599 | Canola | plastid | 74.29 | 47.27 |
| TraesCS5B01G481800.1 | Wheat | nucleus | 69.52 | 46.79 |
| OQU90753 | Sorghum | plastid | 69.52 | 46.5 |
| Zm00001d010614_P007 | Maize | cytosol, mitochondrion, nucleus | 64.76 | 45.64 |
| TraesCS3D01G338700.1 | Wheat | cytosol | 60.95 | 45.07 |
| CDY50450 | Canola | mitochondrion | 74.29 | 44.07 |
| CDY06976 | Canola | cytosol | 73.33 | 44.0 |
| CDX75988 | Canola | cytosol | 73.33 | 43.5 |
| TraesCS3A01G344900.1 | Wheat | cytosol | 60.95 | 42.95 |
| HORVU3Hr1G081210.2 | Barley | cytosol, nucleus | 48.57 | 37.5 |
| Zm00001d034609_P001 | Maize | cytosol, nucleus, plasma membrane | 69.52 | 36.14 |
| TraesCS3B01G377000.1 | Wheat | nucleus | 50.48 | 34.87 |
| TraesCS3D01G338800.1 | Wheat | cytosol, mitochondrion, nucleus | 50.48 | 32.92 |
| TraesCS3D01G338900.1 | Wheat | cytosol, nucleus, plastid | 48.57 | 31.68 |
| HORVU4Hr1G034100.2 | Barley | cytosol | 45.71 | 31.37 |
| Os03t0816200-01 | Rice | cytosol | 20.95 | 30.99 |
| Bra003237.1-P | Field mustard | cytosol, nucleus, peroxisome | 72.38 | 26.76 |
Protein Annotations
| EntrezGene:102580154 | EntrezGene:102599327 | EntrezGene:107062361 | MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR038551 | UniProt:M1C4B4 | PFAM:PF01283 | EnsemblPlantsGene:PGSC0003DMG400023114 |
| PGSC:PGSC0003DMG400023114 | EnsemblPlants:PGSC0003DMT400059492 | ScanProsite:PS00733 | PANTHER:PTHR12538 | PANTHER:PTHR12538:SF6 | InterPro:Ribosomal_S26e |
| InterPro:Ribosomal_S26e_sf | UniParc:UPI0002968BB1 | RefSeq:XP_006344081.1 | RefSeq:XP_006360848.1 | RefSeq:XP_015168394.1 | SEG:seg |
Description
Ribosomal protein S26 [Source:PGSC_GENE;Acc:PGSC0003DMG400023114]
Coordinates
chr10:+:41541055..41541372
Molecular Weight (calculated)
12556.6 Da
IEP (calculated)
11.008
GRAVY (calculated)
-0.662
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MTFKRKNGGR NKHRRDHVKF IRYSNCGKCC PKDKAIKRFL VRNIVEQVVV RNVQKSCAFD LYTLLKLYLK MQYCVSCAIH SRVVRVCSRT DRRVREPPQH
101: FKPKE
101: FKPKE
001: MTFKRRNGGR NKHNRGHVKP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
Arabidopsis Description
RPS26C40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VFW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.