Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
27297264
plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d017254_P002 | |
| Zm00001d039321_P008 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G40590.1 | Zm00001d017254_P002 | AT5G58720.1 | 21798944 |
| AT2G40590.1 | Zm00001d039321_P008 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G469300.1 | Wheat | golgi | 88.64 | 84.17 |
| OQU90753 | Sorghum | plastid | 96.97 | 81.53 |
| HORVU5Hr1G111820.2 | Barley | cytosol, nucleus | 88.64 | 80.14 |
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 75.0 | 79.84 |
| Solyc06g007470.2.1 | Tomato | nucleus | 76.52 | 79.53 |
| PGSC0003DMT400053000 | Potato | cytosol | 76.52 | 79.53 |
| KRH17252 | Soybean | nucleus | 77.27 | 78.46 |
| Solyc04g008810.2.1 | Tomato | nucleus | 75.76 | 78.12 |
| PGSC0003DMT400065105 | Potato | cytosol | 75.76 | 78.12 |
| KRH72901 | Soybean | nucleus | 76.52 | 77.69 |
| TraesCS5B01G481800.1 | Wheat | nucleus | 90.91 | 76.92 |
| KRH57998 | Soybean | nucleus | 75.0 | 76.74 |
| KRH53763 | Soybean | nucleus | 75.0 | 76.74 |
| KRH64187 | Soybean | nucleus | 74.24 | 75.97 |
| KRH04512 | Soybean | nucleus | 74.24 | 75.97 |
| AT3G56340.1 | Thale cress | cytosol | 73.48 | 74.62 |
| CDY25697 | Canola | cytosol | 73.48 | 74.62 |
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 75.76 | 72.99 |
| AT2G40590.1 | Thale cress | cytosol | 71.97 | 72.52 |
| Bra007238.1-P | Field mustard | cytosol | 73.48 | 72.39 |
| CDX72145 | Canola | cytosol | 73.48 | 72.39 |
| CDY68398 | Canola | cytosol | 72.73 | 71.64 |
| CDX67642 | Canola | cytosol | 72.73 | 71.64 |
| AT2G40510.1 | Thale cress | cytosol | 71.97 | 71.43 |
| Zm00001d010614_P007 | Maize | cytosol, mitochondrion, nucleus | 79.55 | 70.47 |
| CDY27223 | Canola | cytosol, mitochondrion | 73.48 | 70.29 |
| PGSC0003DMT400059492 | Potato | cytosol | 55.3 | 69.52 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 76.52 | 68.71 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 75.0 | 66.0 |
| KRH06932 | Soybean | cytosol | 52.27 | 65.09 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 77.27 | 64.97 |
| Bra014697.1-P | Field mustard | cytosol | 72.73 | 62.75 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 62.88 | 61.03 |
| CDY07599 | Canola | plastid | 73.48 | 58.79 |
| CDY24898 | Canola | cytosol, plastid | 73.48 | 58.79 |
| CDY50450 | Canola | mitochondrion | 73.48 | 54.8 |
| PGSC0003DMT400062735 | Potato | cytosol | 43.18 | 54.29 |
| CDY06976 | Canola | cytosol | 71.97 | 54.29 |
| CDX75988 | Canola | cytosol | 72.73 | 54.24 |
| Zm00001d034609_P001 | Maize | cytosol, nucleus, plasma membrane | 80.3 | 52.48 |
| Bra003237.1-P | Field mustard | cytosol, nucleus, peroxisome | 71.21 | 33.1 |
Protein Annotations
| EntrezGene:100193262 | MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | ProteinID:AQK62062.1 | UniProt:B4FEE7 | EMBL:BT035485 |
| EMBL:EU955319 | EMBL:EU967509 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR038551 |
| PFAM:PF01283 | ScanProsite:PS00733 | PANTHER:PTHR12538 | PANTHER:PTHR12538:SF1 | InterPro:Ribosomal_S26e | InterPro:Ribosomal_S26e_sf |
| UniParc:UPI00017B648E | EnsemblPlantsGene:Zm00001d012992 | EnsemblPlants:Zm00001d012992_P002 | EnsemblPlants:Zm00001d012992_T002 | SEG:seg | : |
Description
40S ribosomal protein S26-3
Coordinates
chr5:-:2871120..2873693
Molecular Weight (calculated)
14791.9 Da
IEP (calculated)
11.598
GRAVY (calculated)
-0.828
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MTFKRRNGGR NKHGRGHVKY IRCSNCAKCC PKDKAIKRFL VRNIVEQAAV RDVQEACVHD GYVLPKLYAK VHHCVSCAIH AHIVRVRSRE NRRNREPPQR
101: FRRRDDGPRP GQGPPRPGGA APAAAAAAAP RT
101: FRRRDDGPRP GQGPPRPGGA APAAAAAAAP RT
001: MTFKRRNGGR NKHNRGHVKP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
Arabidopsis Description
RPS26C40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VFW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.