Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 1
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0004g06590.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G40590.1 | VIT_06s0004g06590.t01 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH04512 | Soybean | nucleus | 91.13 | 87.6 |
| KRH17252 | Soybean | nucleus | 91.13 | 86.92 |
| KRH53763 | Soybean | nucleus | 90.32 | 86.82 |
| KRH64187 | Soybean | nucleus | 90.32 | 86.82 |
| KRH72901 | Soybean | nucleus | 90.32 | 86.15 |
| KRH57998 | Soybean | nucleus | 89.52 | 86.05 |
| Solyc04g008810.2.1 | Tomato | nucleus | 87.9 | 85.16 |
| PGSC0003DMT400065105 | Potato | cytosol | 87.9 | 85.16 |
| PGSC0003DMT400053000 | Potato | cytosol | 87.1 | 85.04 |
| Solyc06g007470.2.1 | Tomato | nucleus | 87.1 | 85.04 |
| CDY25697 | Canola | cytosol | 85.48 | 81.54 |
| AT3G56340.1 | Thale cress | cytosol | 85.48 | 81.54 |
| AT2G40590.1 | Thale cress | cytosol | 85.48 | 80.92 |
| Bra007238.1-P | Field mustard | cytosol | 86.29 | 79.85 |
| AT2G40510.1 | Thale cress | cytosol | 85.48 | 79.7 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 95.97 | 79.33 |
| CDX72145 | Canola | cytosol | 85.48 | 79.1 |
| CDY68398 | Canola | cytosol | 84.68 | 78.36 |
| CDX67642 | Canola | cytosol | 84.68 | 78.36 |
| CDY27223 | Canola | cytosol, mitochondrion | 86.29 | 77.54 |
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 85.48 | 77.37 |
| PGSC0003DMT400059492 | Potato | cytosol | 65.32 | 77.14 |
| Zm00001d012992_P002 | Maize | mitochondrion, plasma membrane | 79.84 | 75.0 |
| Os01t0823300-00 | Rice | nucleus | 78.23 | 72.93 |
| KRH06932 | Soybean | cytosol | 61.29 | 71.7 |
| HORVU3Hr1G081220.1 | Barley | cytosol | 61.29 | 71.03 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 83.87 | 70.75 |
| EES19692 | Sorghum | cytosol, nucleus, plastid | 76.61 | 70.37 |
| Bra014697.1-P | Field mustard | cytosol | 85.48 | 69.28 |
| Os05t0477300-03 | Rice | nucleus, plastid | 75.81 | 69.12 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 87.1 | 68.79 |
| TraesCS5A01G469300.1 | Wheat | golgi | 75.81 | 67.63 |
| CDY07599 | Canola | plastid | 87.1 | 65.45 |
| CDY24898 | Canola | cytosol, plastid | 87.1 | 65.45 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 70.97 | 64.71 |
| Zm00001d010614_P007 | Maize | cytosol, mitochondrion, nucleus | 77.42 | 64.43 |
| HORVU5Hr1G111820.2 | Barley | cytosol, nucleus | 75.81 | 64.38 |
| OQU90753 | Sorghum | plastid | 79.84 | 63.06 |
| TraesCS5B01G481800.1 | Wheat | nucleus | 78.23 | 62.18 |
| CDY06976 | Canola | cytosol | 85.48 | 60.57 |
| CDY50450 | Canola | mitochondrion | 86.29 | 60.45 |
| CDX75988 | Canola | cytosol | 85.48 | 59.89 |
| PGSC0003DMT400062735 | Potato | cytosol | 50.0 | 59.05 |
| TraesCS3D01G338700.1 | Wheat | cytosol | 66.94 | 58.45 |
| TraesCS3A01G344900.1 | Wheat | cytosol | 66.13 | 55.03 |
| HORVU3Hr1G081210.2 | Barley | cytosol, nucleus | 51.61 | 47.06 |
| TraesCS3B01G377000.1 | Wheat | nucleus | 57.26 | 46.71 |
| Zm00001d034609_P001 | Maize | cytosol, nucleus, plasma membrane | 73.39 | 45.05 |
| TraesCS3D01G338900.1 | Wheat | cytosol, nucleus, plastid | 54.03 | 41.61 |
| TraesCS3D01G338800.1 | Wheat | cytosol, mitochondrion, nucleus | 53.23 | 40.99 |
| Os03t0816200-01 | Rice | cytosol | 22.58 | 39.44 |
| HORVU4Hr1G034100.2 | Barley | cytosol | 46.77 | 37.91 |
| Bra003237.1-P | Field mustard | cytosol, nucleus, peroxisome | 82.26 | 35.92 |
Protein Annotations
| EntrezGene:100260347 | wikigene:100260347 | MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | ProteinID:CCB43406 | ProteinID:CCB43406.1 |
| UniProt:F6GUB9 | EMBL:FN594951 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030529 | InterPro:IPR038551 |
| EntrezGene:LOC100260347 | wikigene:LOC100260347 | PFAM:PF01283 | ScanProsite:PS00733 | PANTHER:PTHR12538 | PANTHER:PTHR12538:SF6 |
| InterPro:Ribosomal_S26e | InterPro:Ribosomal_S26e_sf | TIGR:TC55310 | UniParc:UPI0001983712 | ArrayExpress:VIT_06s0004g07940 | EnsemblPlantsGene:VIT_06s0004g07940 |
| EnsemblPlants:VIT_06s0004g07940.t01 | RefSeq:XP_002267919 | RefSeq:XP_002267919.1 | SEG:seg | : | : |
Description
40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:F6GUB9]
Coordinates
chr6:-:8682521..8684729
Molecular Weight (calculated)
14266.5 Da
IEP (calculated)
11.392
GRAVY (calculated)
-0.826
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MTFKRRNGGR NKHGRGHVKF IRCSNCGKCC PKDKAIKRFL VRNIVEQAAV RDVQEACVYD TYTLPKLYAK MQYCVSCAIH SHVVRVRSRT DRRKRDPPLR
101: FRRRDDMPKP GQAPRPAGAA AARP
101: FRRRDDMPKP GQAPRPAGAA AARP
001: MTFKRRNGGR NKHNRGHVNP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV
101: FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV
Arabidopsis Description
RPS26B40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VTX1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.