Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr7P14310_001 | |
| GSMUA_Achr7P14320_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G40590.1 | GSMUA_Achr7P14310_001 | AT5G58720.1 | 21798944 |
| AT2G40590.1 | GSMUA_Achr7P14320_001 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 80.95 | 86.86 |
| Solyc06g007470.2.1 | Tomato | nucleus | 72.79 | 84.25 |
| PGSC0003DMT400053000 | Potato | cytosol | 72.79 | 84.25 |
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 70.75 | 83.87 |
| KRH17252 | Soybean | nucleus | 73.47 | 83.08 |
| Solyc04g008810.2.1 | Tomato | nucleus | 72.11 | 82.81 |
| PGSC0003DMT400065105 | Potato | cytosol | 72.11 | 82.81 |
| KRH72901 | Soybean | nucleus | 72.79 | 82.31 |
| KRH57998 | Soybean | nucleus | 72.11 | 82.17 |
| KRH04512 | Soybean | nucleus | 71.43 | 81.4 |
| KRH53763 | Soybean | nucleus | 71.43 | 81.4 |
| KRH64187 | Soybean | nucleus | 71.43 | 81.4 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 83.67 | 78.34 |
| PGSC0003DMT400059492 | Potato | cytosol | 55.1 | 77.14 |
| Zm00001d012992_P002 | Maize | mitochondrion, plasma membrane | 68.71 | 76.52 |
| CDY25697 | Canola | cytosol | 67.35 | 76.15 |
| CDX72145 | Canola | cytosol | 68.03 | 74.63 |
| Bra007238.1-P | Field mustard | cytosol | 68.03 | 74.63 |
| AT2G40590.1 | Thale cress | cytosol | 65.99 | 74.05 |
| AT3G56340.1 | Thale cress | cytosol | 65.31 | 73.85 |
| AT2G40510.1 | Thale cress | cytosol | 65.99 | 72.93 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 66.67 | 72.06 |
| CDY27223 | Canola | cytosol, mitochondrion | 67.35 | 71.74 |
| CDX67642 | Canola | cytosol | 64.63 | 70.9 |
| CDY68398 | Canola | cytosol | 64.63 | 70.9 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 72.11 | 70.67 |
| KRH06932 | Soybean | cytosol | 50.34 | 69.81 |
| Os01t0823300-00 | Rice | nucleus | 62.59 | 69.17 |
| HORVU3Hr1G081220.1 | Barley | cytosol | 49.66 | 68.22 |
| TraesCS5A01G469300.1 | Wheat | golgi | 63.95 | 67.63 |
| EES19692 | Sorghum | cytosol, nucleus, plastid | 61.22 | 66.67 |
| PGSC0003DMT400062735 | Potato | cytosol | 46.94 | 65.71 |
| OQU90753 | Sorghum | plastid | 69.39 | 64.97 |
| Os05t0477300-03 | Rice | nucleus, plastid | 59.86 | 64.71 |
| Bra014697.1-P | Field mustard | cytosol | 67.35 | 64.71 |
| HORVU5Hr1G111820.2 | Barley | cytosol, nucleus | 63.95 | 64.38 |
| TraesCS5B01G481800.1 | Wheat | nucleus | 66.67 | 62.82 |
| CDY24898 | Canola | cytosol, plastid | 69.39 | 61.82 |
| CDY07599 | Canola | plastid | 68.71 | 61.21 |
| Zm00001d010614_P007 | Maize | cytosol, mitochondrion, nucleus | 61.9 | 61.07 |
| TraesCS3D01G338700.1 | Wheat | cytosol | 55.1 | 57.04 |
| CDY50450 | Canola | mitochondrion | 67.35 | 55.93 |
| CDX75988 | Canola | cytosol | 66.67 | 55.37 |
| CDY06976 | Canola | cytosol | 65.31 | 54.86 |
| TraesCS3A01G344900.1 | Wheat | cytosol | 54.42 | 53.69 |
| HORVU3Hr1G081210.2 | Barley | cytosol, nucleus | 45.58 | 49.26 |
| TraesCS3B01G377000.1 | Wheat | nucleus | 49.66 | 48.03 |
| TraesCS3D01G338900.1 | Wheat | cytosol, nucleus, plastid | 48.98 | 44.72 |
| Zm00001d034609_P001 | Maize | cytosol, nucleus, plasma membrane | 61.22 | 44.55 |
| TraesCS3D01G338800.1 | Wheat | cytosol, mitochondrion, nucleus | 47.62 | 43.48 |
| Os03t0816200-01 | Rice | cytosol | 19.73 | 40.85 |
| HORVU4Hr1G034100.2 | Barley | cytosol | 41.5 | 39.87 |
| Bra003237.1-P | Field mustard | cytosol, nucleus, peroxisome | 63.95 | 33.1 |
Protein Annotations
| MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | EnsemblPlantsGene:GSMUA_Achr10G13150_001 |
| EnsemblPlants:GSMUA_Achr10P13150_001 | EnsemblPlants:GSMUA_Achr10T13150_001 | InterPro:IPR038551 | UniProt:M0RHU1 | PFAM:PF01283 | ScanProsite:PS00733 |
| PANTHER:PTHR12538 | PANTHER:PTHR12538:SF6 | InterPro:Ribosomal_S26e | InterPro:Ribosomal_S26e_sf | UniParc:UPI00029576F7 | SEG:seg |
Description
40S ribosomal protein S26-1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G13150_001]
Coordinates
chr10:-:21932036..21935384
Molecular Weight (calculated)
16829.3 Da
IEP (calculated)
11.019
GRAVY (calculated)
-0.984
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MWESDGSDQK NRLVGSSDAP KMTFKRRNGG RNKHGRGHVN FIRCSNCGKC CPKDKAIKRF LVRNIVEQAA VRDVQEACAY DGYMLPKLYI KMQYCVSCAI
101: HSKVVRVRSR TDRRNREPPQ RYRRRDDLAR PGQGPRPVGA ATNPPRP
101: HSKVVRVRSR TDRRNREPPQ RYRRRDDLAR PGQGPRPVGA ATNPPRP
001: MTFKRRNGGR NKHNRGHVNP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV
101: FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV
Arabidopsis Description
RPS26B40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VTX1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.