Factsheet for Zm00001d034609_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017254_P002
Zm00001d039321_P008

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40590.1	Zm00001d017254_P002	AT5G58720.1	21798944
AT2G40590.1	Zm00001d039321_P008	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012992_P002	Maize	mitochondrion, plasma membrane	52.48	80.3
VIT_06s0004g07940.t01	Wine grape	cytosol	45.05	73.39
KRH64187	Soybean	nucleus	46.04	72.09
KRH57998	Soybean	nucleus	46.04	72.09
KRH53763	Soybean	nucleus	46.04	72.09
KRH72901	Soybean	nucleus	46.04	71.54
KRH17252	Soybean	nucleus	46.04	71.54
KRH04512	Soybean	nucleus	45.54	71.32
Solyc06g007470.2.1	Tomato	nucleus	44.06	70.08
PGSC0003DMT400053000	Potato	cytosol	44.06	70.08
Solyc04g008810.2.1	Tomato	nucleus	44.06	69.53
PGSC0003DMT400065105	Potato	cytosol	44.06	69.53
PGSC0003DMT400059492	Potato	cytosol	36.14	69.52
CDY25697	Canola	cytosol	44.55	69.23
AT3G56340.1	Thale cress	cytosol	44.06	68.46
AT2G40590.1	Thale cress	cytosol	44.06	67.94
Bra007238.1-P	Field mustard	cytosol	44.55	67.16
CDX72145	Canola	cytosol	44.55	67.16
AT2G40510.1	Thale cress	cytosol	44.06	66.92
Zm00001d010614_P007	Maize	cytosol, mitochondrion, nucleus	49.01	66.44
CDX67642	Canola	cytosol	44.06	66.42
CDY68398	Canola	cytosol	44.06	66.42
GSMUA_Achr3P17860_001	Banana	mitochondrion	44.55	65.69
CDY27223	Canola	cytosol, mitochondrion	44.55	65.22
VIT_13s0067g02700.t01	Wine grape	plastid	45.54	61.33
KRH06932	Soybean	cytosol	32.18	61.32
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	44.55	61.22
GSMUA_Achr6P15550_001	Banana	cytosol	40.59	60.29
Os03t0816200-01	Rice	cytosol	20.79	59.15
GSMUA_Achr6P23430_001	Banana	plastid	45.05	57.96
Bra014697.1-P	Field mustard	cytosol	43.56	57.52
CDY24898	Canola	cytosol, plastid	45.05	55.15
CDY07599	Canola	plastid	45.05	55.15
CDY06976	Canola	cytosol	44.55	51.43
CDY50450	Canola	mitochondrion	44.55	50.85
CDX75988	Canola	cytosol	44.06	50.28
PGSC0003DMT400062735	Potato	cytosol	25.74	49.52
HORVU4Hr1G034100.2	Barley	cytosol	32.67	43.14
Bra003237.1-P	Field mustard	cytosol, nucleus, peroxisome	43.56	30.99

Protein Annotations

EntrezGene:100193263	MapMan:17.1.3.1.27	Gene3D:3.30.1740.20	UniProt:A0A1D6L996	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0030529	InterPro:IPR038551	ProteinID:ONM10769.1	PFAM:PF01283	ScanProsite:PS00733	PANTHER:PTHR12538
PANTHER:PTHR12538:SF1	InterPro:Ribosomal_S26e	InterPro:Ribosomal_S26e_sf	UniParc:UPI000843EFD0	EnsemblPlantsGene:Zm00001d034609	EnsemblPlants:Zm00001d034609_P001
EnsemblPlants:Zm00001d034609_T001	SEG:seg	:	:	:	:

Description

40S ribosomal protein S26

Coordinates

chr1:+:297759749..297762736

Molecular Weight (calculated)

23205.1 Da

IEP (calculated)

11.314

GRAVY (calculated)

-0.056

Length

202 amino acids

Sequence
(BLAST)

001: MTFKRRNGGR NKHGRGHVKY IRCSNCAKCC PKRSAFLDIL TCVAIFGLNY LSKLLWKMYD VGTIFYSQDK AIKRFLVRNI VEQAAVRDVQ EACVHDGYVL
101: PKLYAKVHHC VSCAIHAHIV RVRSRENRRN REPPQRFRRR FPVVLHVSLV LDKAISVVLM MAQGQVRAHR AQVLLPQQLP LLPLLVPKFR NAIRGLVLSP
201: MG

Best Arabidopsis Sequence Match ( AT2G40510.1 )
(BLAST)

001: MTFKRRNGGR NKHNRGHVNP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV

Arabidopsis Description

RPS26B40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VTX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.