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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 25464976
unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc06g007110.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G40590.1 Solyc06g007110.2.1 AT5G58720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400065105 Potato cytosol 100.0 100.0
Solyc06g007470.2.1 Tomato nucleus 97.66 98.43
VIT_06s0004g07940.t01 Wine grape cytosol 85.16 87.9
KRH53763 Soybean nucleus 86.72 86.05
KRH64187 Soybean nucleus 85.94 85.27
KRH57998 Soybean nucleus 85.94 85.27
KRH72901 Soybean nucleus 85.94 84.62
KRH17252 Soybean nucleus 85.94 84.62
KRH04512 Soybean nucleus 85.16 84.5
GSMUA_Achr3P17860_001 Banana mitochondrion 85.16 79.56
AT3G56340.1 Thale cress cytosol 80.47 79.23
CDY25697 Canola cytosol 78.91 77.69
AT2G40590.1 Thale cress cytosol 78.91 77.1
Bra007238.1-P Field mustard cytosol 79.69 76.12
AT2G40510.1 Thale cress cytosol 78.91 75.94
Zm00001d012992_P002 Maize mitochondrion, plasma membrane 78.12 75.76
CDX72145 Canola cytosol 78.91 75.37
CDY68398 Canola cytosol 78.12 74.63
CDX67642 Canola cytosol 78.12 74.63
CDY27223 Canola cytosol, mitochondrion 79.69 73.91
KRH06932 Soybean cytosol 60.94 73.58
VIT_13s0067g02700.t01 Wine grape plastid 85.16 72.67
GSMUA_Achr10P... Banana cytosol, nucleus, plastid 82.81 72.11
Os01t0823300-00 Rice nucleus 73.44 70.68
GSMUA_Achr6P23430_001 Banana plastid 85.94 70.06
HORVU3Hr1G081220.1 Barley cytosol 57.81 69.16
Os05t0477300-03 Rice nucleus, plastid 72.66 68.38
GSMUA_Achr6P15550_001 Banana cytosol 71.88 67.65
EES19692 Sorghum cytosol, nucleus, plastid 71.09 67.41
TraesCS5A01G469300.1 Wheat golgi 71.88 66.19
Bra014697.1-P Field mustard cytosol 78.91 66.01
OQU90753 Sorghum plastid 78.91 64.33
HORVU5Hr1G111820.2 Barley cytosol, nucleus 71.88 63.01
TraesCS5B01G481800.1 Wheat nucleus 75.0 61.54
CDY24898 Canola cytosol, plastid 78.91 61.21
CDY07599 Canola plastid 78.91 61.21
Zm00001d010614_P007 Maize cytosol, mitochondrion, nucleus 70.31 60.4
TraesCS3D01G338700.1 Wheat cytosol 64.84 58.45
CDY06976 Canola cytosol 78.91 57.71
CDY50450 Canola mitochondrion 79.69 57.63
CDX75988 Canola cytosol 78.91 57.06
TraesCS3A01G344900.1 Wheat cytosol 64.84 55.7
HORVU3Hr1G081210.2 Barley cytosol, nucleus 50.0 47.06
TraesCS3B01G377000.1 Wheat nucleus 53.91 45.39
Zm00001d034609_P001 Maize cytosol, nucleus, plasma membrane 69.53 44.06
Os03t0816200-01 Rice cytosol 22.66 40.85
TraesCS3D01G338800.1 Wheat cytosol, mitochondrion, nucleus 50.0 39.75
TraesCS3D01G338900.1 Wheat cytosol, nucleus, plastid 50.0 39.75
HORVU4Hr1G034100.2 Barley cytosol 43.75 36.6
Bra003237.1-P Field mustard cytosol, nucleus, peroxisome 75.78 34.15
Protein Annotations
MapMan:17.1.3.1.27Gene3D:3.30.1740.20GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003729
GO:GO:0003735GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0019538GO:GO:0022627GO:GO:0030529InterPro:IPR038551
UniProt:K4BP37PFAM:PF01283ScanProsite:PS00733PANTHER:PTHR12538PANTHER:PTHR12538:SF6InterPro:Ribosomal_S26e
InterPro:Ribosomal_S26e_sfEnsemblPlantsGene:Solyc04g008810.2EnsemblPlants:Solyc04g008810.2.1UniParc:UPI0002767323SEG:seg:
Description
40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:K4BP37]
Coordinates
chr4:+:2432009..2434241
Molecular Weight (calculated)
14589.9 Da
IEP (calculated)
11.518
GRAVY (calculated)
-0.727
Length
128 amino acids
Sequence
(BLAST)
001: MTFKRRNGGR NKHGRGHVKF IRCSNCGKCC PKDKAIKRFL VRNIVEQAAV RDVQEACAFE LYTLPKLYLK MQYCVSCAIH SKVVRVRSRT DRRVREPPQR
101: FRRPRDDLPK AGQAPRPAGG APPAAART
Best Arabidopsis Sequence Match ( AT2G40590.1 )
(BLAST)
001: MTFKRRNGGR NKHNRGHVNP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FTRRKEDTPK PGQPGQAPRP AGPGAAAAPR V
Arabidopsis Description
RPS26A40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VPZ6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.