Factsheet for Solyc06g007110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g078140.2.1
Solyc02g084990.2.1
Solyc03g006400.2.1
Solyc06g008600.2.1
Solyc06g084040.2.1
Solyc09g007250.2.1
Solyc09g010620.1.1
Solyc09g065990.2.1
Solyc09g098390.2.1
Solyc10g084350.1.1
Solyc10g086010.1.1
Solyc11g066420.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58720.1	Solyc06g008600.2.1	AT2G30580.1	21798944
AT5G58720.1	Solyc06g084040.2.1	AT2G30580.1	21798944
AT5G58720.1	Solyc09g065990.2.1	AT2G30580.1	21798944
AT5G58720.1	Solyc09g098390.2.1	AT2G43370.1	21798944
AT5G58720.1	Solyc09g007250.2.1	AT3G09630.1	21798944
AT5G58720.1	Solyc10g084350.1.1	AT3G09630.1	21798944
AT5G58720.1	Solyc10g086010.1.1	AT3G09630.1	21798944
AT5G58720.1	Solyc09g010620.1.1	AT4G15900.1	10220464
AT5G58720.1	Solyc11g066420.1.1	AT5G22890.1	21798944
AT5G58720.1	Solyc02g078140.2.1	AT5G58950.1	21798944
AT5G58720.1	Solyc03g006400.2.1	AT5G58950.1	21798944
AT5G58720.1	Solyc02g084990.2.1	AT5G66460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010646	Potato	nucleus	90.77	90.94
GSMUA_Achr7P14310_001	Banana	endoplasmic reticulum, golgi	10.02	54.84
VIT_06s0004g06590.t01	Wine grape	nucleus	46.17	48.06
KRG98291	Soybean	nucleus	46.37	46.37
CDX71154	Canola	nucleus	39.1	45.23
KRH30312	Soybean	nucleus	44.2	43.95
Bra006747.1-P	Field mustard	nucleus	41.06	42.05
CDY61025	Canola	nucleus	41.06	42.05
Zm00001d017254_P002	Maize	cytosol	12.77	41.94
AT5G58720.1	Thale cress	nucleus	42.04	41.23
CDY02832	Canola	nucleus	41.65	40.61
CDY32688	Canola	nucleus	40.27	40.27
Bra020357.1-P	Field mustard	nucleus	41.06	39.96
GSMUA_Achr7P14320_001	Banana	nucleus	28.49	33.56
TraesCS3B01G177300.1	Wheat	plastid	32.42	30.61
OQU86087	Sorghum	nucleus	34.77	29.8
TraesCS3D01G158200.1	Wheat	plastid	33.79	29.15
TraesCS3A01G150300.2	Wheat	plastid	33.6	28.98
HORVU3Hr1G030600.8	Barley	mitochondrion	34.18	25.29
Zm00001d039321_P008	Maize	nucleus	30.84	24.01
Solyc07g063240.2.1	Tomato	cytosol	21.02	20.62
Os01t0225100-01	Rice	nucleus	11.2	20.21

Protein Annotations

Gene3D:3.30.1370.110	MapMan:35.1	ncoils:Coil	InterPro:DUF1771	InterPro:IPR002625	UniProt:K4C394
PFAM:PF01713	PFAM:PF08590	PFscan:PS50828	PANTHER:PTHR13308	PANTHER:PTHR13308:SF22	SMART:SM00463
SMART:SM01162	SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf	EnsemblPlantsGene:Solyc06g007110.2	EnsemblPlants:Solyc06g007110.2.1
UniParc:UPI0002765F36	SEG:seg	:	:	:	:

Description

SMR domain-containing protein At5g58720 [Source:Projected from Arabidopsis thaliana (AT5G58720) UniProtKB/Swiss-Prot;Acc:O65573]

Coordinates

chr6:+:1157531..1164321

Molecular Weight (calculated)

55790.4 Da

IEP (calculated)

6.790

GRAVY (calculated)

-0.585

Length

509 amino acids

Sequence
(BLAST)

001: MKHQKKKKRS KACKKVGVGN GSLPSGNSND GGESVVTALT EAFTSVSMEE ATCAYEEANG DLNKAMEILG DMVERKEEDK ITTCSSSSGN VGSSLDSSNS
101: EVFVGGHSWQ NSVQRKAKVK KLVAATGTVS TMIGKDYVRT TTKKSCSKLK GLHDETSSNE DVEQFLYSML GEDSDLSLAV VRDVLCQCGY EVEKALSVLL
201: ELSASSNEKP KLSDCSANWK EEAVFLHSSD GLTDWTSDST SHSSESEVLD NVWFYGPPGR NSLKVPAGNS EHSSSSTVGN SGSVLPQDIL ESLFCMPTPK
301: SVEHEPTTMN WKNVVKKMTS LGQRSGSCPN DIPPLQHTHA EGAEYQLFRE TAKQHWESMR SHYQKAATAF SNGQKGHAAY LADQGRLHNR KAREADAKAS
401: QDIFAARNKN IENMITIDLH GQHVKPAMRL LKLHLLFGAF VRSVRLFRVI TGCGAHGVGK SKLKNSVVEL LKKEHIEWTE ENRGTLLIKL DGRMNFSFVD
501: TDDNDEDDN

Best Arabidopsis Sequence Match ( AT5G58720.1 )
(BLAST)

001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE

Arabidopsis Description

PIPCSMR domain-containing protein At5g58720 [Source:UniProtKB/Swiss-Prot;Acc:O65573]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.