Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006747.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX71154 | Canola | nucleus | 79.88 | 90.23 |
| CDY02832 | Canola | nucleus | 70.22 | 66.86 |
| CDY32688 | Canola | nucleus | 68.01 | 66.4 |
| AT5G58720.1 | Thale cress | nucleus | 68.21 | 65.32 |
| GSMUA_Achr7P14310_001 | Banana | endoplasmic reticulum, golgi | 10.26 | 54.84 |
| VIT_06s0004g06590.t01 | Wine grape | nucleus | 44.67 | 45.4 |
| Zm00001d017254_P002 | Maize | cytosol | 14.08 | 45.16 |
| KRG98291 | Soybean | nucleus | 43.06 | 42.04 |
| KRH30312 | Soybean | nucleus | 42.86 | 41.6 |
| PGSC0003DMT400010646 | Potato | nucleus | 42.05 | 41.14 |
| Solyc06g007110.2.1 | Tomato | nucleus | 42.05 | 41.06 |
| GSMUA_Achr7P14320_001 | Banana | nucleus | 29.38 | 33.8 |
| TraesCS3B01G177300.1 | Wheat | plastid | 34.61 | 31.91 |
| TraesCS3A01G150300.2 | Wheat | plastid | 36.82 | 31.02 |
| OQU86087 | Sorghum | nucleus | 36.82 | 30.81 |
| TraesCS3D01G158200.1 | Wheat | plastid | 36.22 | 30.51 |
| HORVU3Hr1G030600.8 | Barley | mitochondrion | 36.82 | 26.6 |
| Zm00001d039321_P008 | Maize | nucleus | 34.61 | 26.3 |
| Os01t0225100-01 | Rice | nucleus | 12.68 | 22.34 |
| CDY20114 | Canola | nucleus | 20.32 | 21.22 |
| CDY21839 | Canola | nucleus | 19.92 | 20.84 |
| CDX97665 | Canola | nucleus | 19.52 | 20.08 |
| CDX98557 | Canola | nucleus | 19.11 | 19.23 |
Protein Annotations
| EnsemblPlants:CDY61025 | EnsemblPlantsGene:GSBRNA2T00030455001 | Gene3D:3.30.1370.110 | InterPro:DUF1771 | InterPro:IPR002625 | InterPro:Smr_dom |
| InterPro:Smr_dom_sf | PANTHER:PTHR13308 | PANTHER:PTHR13308:SF22 | PFAM:PF01713 | PFAM:PF08590 | PFscan:PS50828 |
| ProteinID:CDY61025 | ProteinID:CDY61025.1 | SEG:seg | SMART:SM00463 | SMART:SM01162 | SUPFAM:SSF160443 |
| UniParc:UPI000254030B | UniProt:A0A078JAQ2 | MapMan:35.1 | : | : | : |
Description
BnaAnng17340DBnaAnng17340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAQ2]
Coordinates
chrLK033946:+:21580..24365
Molecular Weight (calculated)
54237.3 Da
IEP (calculated)
6.162
GRAVY (calculated)
-0.641
Length
497 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHDSQQKRR KKKRPSSGDG AATSGVNTKE LDEEKRHIES LMDAFCSVSM EEATSAYREA AGDLNKAAEL LSDLVENGDD PSTSSGQETG STSEYGAGSS
101: SSCCGDDVAR ESLFMGGRSK QIRVIAATGM VSSVIAKDYL KAKKEFPSFV ERSKELSGKK AGDREKAEQF LTSMLGDDCE LSMAVVRDVL CQCGYDVDMA
201: LNVLLDMSSS SSTNDDSLSG RSSRIGFSDS LADTSFDTDT SESEPSFWGG FSPRDYSKAL MSDPFTTRQG SCEPFHPQKM LESLFNIPQS TKHEPKTMSW
301: RNVAKKMQSL GIDASSSSGE GSHPENFGKD DGYHELRKGA NDQWNVTKSY YQKAAEAYSK GGRAHAAYLS DKGRAASKLA QRADERASQD IFVARNKGIE
401: NMITIDLHGQ HVKQAMRLLK MHLLLGAYVP SIQTLRVITG CGSHGFGKSK VKQSVTKLLE REGVGYCEEN RGTLLIKLEG CSREFSFIDT ESDSDLS
101: SSCCGDDVAR ESLFMGGRSK QIRVIAATGM VSSVIAKDYL KAKKEFPSFV ERSKELSGKK AGDREKAEQF LTSMLGDDCE LSMAVVRDVL CQCGYDVDMA
201: LNVLLDMSSS SSTNDDSLSG RSSRIGFSDS LADTSFDTDT SESEPSFWGG FSPRDYSKAL MSDPFTTRQG SCEPFHPQKM LESLFNIPQS TKHEPKTMSW
301: RNVAKKMQSL GIDASSSSGE GSHPENFGKD DGYHELRKGA NDQWNVTKSY YQKAAEAYSK GGRAHAAYLS DKGRAASKLA QRADERASQD IFVARNKGIE
401: NMITIDLHGQ HVKQAMRLLK MHLLLGAYVP SIQTLRVITG CGSHGFGKSK VKQSVTKLLE REGVGYCEEN RGTLLIKLEG CSREFSFIDT ESDSDLS
001: MKQKNQHKKK KKRSCAAKPS GDGTTSDGNK KDVEEERKDG EGKREIENVG KNFIESLMEA FCSVSMEEAM AAYKEAGGDL NKAAEILSDL VESGDDPSTS
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
101: SVASGSSGQE TASTSEYGAG SSSSCSEDLT RDRWFKGSKQ SRVIAATGMV SSVIAKDYLK PNPVRKEFPM MERSKELCGN GKKAADREKA EQFLSSMLGD
201: DCELSMAVVR DVLCQCGYDV DMALNVLLDM SSSSTDDSLS GKCFGIGVSD SLAESSFDTD TSDCELFWGG DYSQRDYAKA LMSSQDPFAT TQGIDELGLP
301: QKVLESLFNI RQNPKHESKT TSWRNVAKKM QSLGIDASSS SGEEPHPNTF VKDDSYHELR KGANDQWNVT KSYYQKAAEA YSKGGRAHAA YLSDKGRVAS
401: KQAQRADERA SQDIFVARNK GIENVVTIDL HGQHVKPAMK LLKLHLLFGS YVPSIQTLRV ITGCGASGFG KSKVKQSVVK LLEREGVRYC EENRGTLLIK
501: LDGGSREFSF LDTESDSDE
Arabidopsis Description
PIPCSMR domain-containing protein At5g58720 [Source:UniProtKB/Swiss-Prot;Acc:O65573]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.