CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79176
CDX91876
CDX93183
CDY07174
CDY08148
CDY48504
CDY52927
CDY67475

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22890.1	CDX93183	AT2G19650.1	21798944
AT5G22890.1	CDY52927	AT2G19650.1	21798944
AT5G22890.1	CDY08148	AT3G49580.1	21798944
AT5G22890.1	CDX79176	AT4G01090.1	21798944
AT5G22890.1	CDX91876	AT4G01090.1	21798944
AT5G22890.1	CDY07174	AT4G01090.1	21798944
AT5G22890.1	CDY48504	AT4G01090.1	21798944
AT5G22890.1	CDY67475	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26965	Canola	nucleus	93.28	94.81
Bra002437.1-P	Field mustard	nucleus	60.75	90.76
CDX74505	Canola	nucleus	82.8	81.91
CDY26966	Canola	nucleus	82.8	81.91
CDX98183	Canola	nucleus	82.8	81.91
CDY31715	Canola	nucleus	82.8	81.91
CDY09179	Canola	nucleus	66.4	76.23
CDY09178	Canola	nucleus	69.89	70.46
AT5G22890.1	Thale cress	nucleus	67.47	67.29
GSMUA_Achr1P15330_001	Banana	cytosol	37.9	50.18
KRH22822	Soybean	plastid	37.1	49.64
PGSC0003DMT400001105	Potato	nucleus	38.98	45.6
Solyc11g066420.1.1	Tomato	nucleus, plastid	44.62	43.23
VIT_06s0061g00780.t01	Wine grape	nucleus	44.09	42.05
GSMUA_Achr11P...	Banana	nucleus	37.63	41.18
TraesCS1A01G060200.1	Wheat	nucleus	39.52	38.28
TraesCS1D01G061200.1	Wheat	nucleus	38.98	37.47
Os08t0562300-01	Rice	nucleus	38.71	37.4
TraesCS1B01G078700.1	Wheat	nucleus	38.98	36.99
Zm00001d031895_P001	Maize	nucleus	40.32	35.8
OQU80698	Sorghum	nucleus	39.78	34.82
Os04t0165200-01	Rice	nucleus	34.14	34.23
CDY12041	Canola	nucleus	30.91	28.12
CDY03148	Canola	nucleus	32.53	28.07
CDY57608	Canola	nucleus	17.2	26.67
CDX67704	Canola	nucleus	17.2	26.02
CDY46467	Canola	nucleus	33.33	25.41
CDX91774	Canola	nucleus	33.6	25.2
CDY12025	Canola	nucleus	18.01	23.34
CDY03134	Canola	nucleus	17.47	22.65
CDY06390	Canola	nucleus	20.16	22.46
CDY35565	Canola	nucleus	20.16	22.12
CDY19385	Canola	nucleus	18.01	22.04
CDY26642	Canola	nucleus	17.47	21.96
CDX97995	Canola	nucleus	17.74	21.43
CDY29624	Canola	nucleus	19.35	21.18
CDY22834	Canola	nucleus, plastid	19.09	21.01
CDX93575	Canola	nucleus	18.82	20.77
CDX95075	Canola	nucleus	18.82	20.71
CDY25224	Canola	nucleus	18.82	20.71
CDY57920	Canola	nucleus	19.89	20.61
CDY27556	Canola	nucleus	19.62	20.39
CDX88959	Canola	nucleus	19.89	20.33
CDX72006	Canola	nucleus	20.16	20.11
CDY06083	Canola	nucleus	19.89	19.79
CDY06308	Canola	nucleus	17.47	19.29
CDY22690	Canola	nucleus	17.47	19.29

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	GO:A0A078JQN1	UniProt:A0A078JQN1	EnsemblPlants:CDY69109	ProteinID:CDY69109
ProteinID:CDY69109.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00083073001	InterPro:IPR013087
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF41	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI0004EDF636	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

BnaCnng61920DBnaCnng61920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQN1]

Coordinates

chrLK038666:-:1770..2927

Molecular Weight (calculated)

42155.3 Da

IEP (calculated)

6.963

GRAVY (calculated)

-0.625

Length

372 amino acids

Sequence
(BLAST)

001: MNQRGLMMNT GEWSMSCCSE TNSSSTIYTN SMAAATRSSG DDISLSLLFN LSTIQDKVHE IQSLVNFFMI SPSNNNQSSE STSSLAAANV ESLVQDIITA
101: ASSMMLTCQS LQISTGDNSN IDTSQTTDGT FMEFSQDFDP DHDFVQESST NLLESSSNLL GVQEREHDSL IDQSLDWHSI QTTNPKTDHH HFKSRTGNYE
201: IVELSVEDLL AKYTHYCQIC GKGFKRDANL RMHMRAHGDE YKTREALINP TSRDKNVEYS SLTRHYYSCP QHGCRWNQRH DKFQPLKSVI CAKNHYKRSH
301: CPKIYMCRRC NVKHFSVLSD LRTHEKHCGD IKWVCSCGTR FSRKDKLTSH VSLFSGHSPA HEPLPQPPMI SL

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.