Factsheet for TraesCS1D01G061200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G425200.2
TraesCS1B01G459600.2
TraesCS1D01G434200.2
TraesCS3A01G224200.2
TraesCS3B01G253700.2
TraesCS3D01G229400.1
TraesCS7A01G336000.1
TraesCS7A01G351500.1
TraesCS7B01G247600.1
TraesCS7B01G276600.1
TraesCS7D01G343700.1
TraesCS7D01G371500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22890.1	TraesCS1A01G425200.2	AT4G01090.1	21798944
AT5G22890.1	TraesCS1B01G459600.2	AT4G01090.1	21798944
AT5G22890.1	TraesCS1D01G434200.2	AT4G01090.1	21798944
AT5G22890.1	TraesCS3A01G224200.2	AT4G01090.1	21798944
AT5G22890.1	TraesCS3B01G253700.2	AT4G01090.1	21798944
AT5G22890.1	TraesCS3D01G229400.1	AT4G01090.1	21798944
AT5G22890.1	TraesCS7A01G336000.1	AT4G01090.1	21798944
AT5G22890.1	TraesCS7A01G351500.1	AT4G01090.1	21798944
AT5G22890.1	TraesCS7B01G247600.1	AT4G01090.1	21798944
AT5G22890.1	TraesCS7B01G276600.1	AT4G01090.1	21798944
AT5G22890.1	TraesCS7D01G343700.1	AT4G01090.1	21798944
AT5G22890.1	TraesCS7D01G371500.1	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G078700.1	Wheat	nucleus	91.73	90.56
TraesCS1A01G060200.1	Wheat	nucleus	89.41	90.1
Os08t0562300-01	Rice	nucleus	56.07	56.36
GSMUA_Achr1P15330_001	Banana	cytosol	39.02	53.74
OQU80698	Sorghum	nucleus	57.11	52.0
Zm00001d031895_P001	Maize	nucleus	55.81	51.55
GSMUA_Achr11P...	Banana	nucleus	43.93	50.0
KRH22822	Soybean	plastid	33.59	46.76
CDY09179	Canola	nucleus	36.95	44.14
PGSC0003DMT400001105	Potato	nucleus	35.4	43.08
VIT_06s0061g00780.t01	Wine grape	nucleus	43.15	42.82
AT5G22890.1	Thale cress	nucleus	39.02	40.48
CDY26965	Canola	nucleus	37.21	39.34
CDY69109	Canola	nucleus	37.47	38.98
CDY09178	Canola	nucleus	36.95	38.75
Solyc11g066420.1.1	Tomato	nucleus, plastid	37.98	38.28
CDY26966	Canola	nucleus	36.95	38.03
CDX74505	Canola	nucleus	36.69	37.77
CDX98183	Canola	nucleus	36.69	37.77
CDY31715	Canola	nucleus	36.69	37.77
Bra002438.1-P	Field mustard	nucleus	36.69	37.77
TraesCS3D01G054300.1	Wheat	nucleus	25.06	36.06
Bra020224.1-P	Field mustard	nucleus	23.51	30.23
TraesCS6D01G188100.1	Wheat	nucleus	28.68	30.08
Bra020223.1-P	Field mustard	nucleus	22.74	29.63
TraesCS5D01G519100.1	Wheat	nucleus	29.97	28.16
TraesCS3D01G375000.1	Wheat	nucleus	33.59	25.0
TraesCS5D01G179700.1	Wheat	nucleus	18.09	22.73
TraesCS3D01G364800.1	Wheat	nucleus	20.16	21.25
Bra002437.1-P	Field mustard	nucleus	12.92	20.08
TraesCS7D01G397800.1	Wheat	nucleus	18.86	19.73
TraesCS1D01G276200.1	Wheat	nucleus, plastid	18.6	19.62
TraesCS5D01G184400.1	Wheat	nucleus	17.57	19.15
TraesCS5D01G270700.1	Wheat	nucleus	19.9	18.78
TraesCS7D01G242600.1	Wheat	nucleus	20.16	18.75

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009719	GO:GO:0009987
GO:GO:0010044	GO:GO:0010200	GO:GO:0010447	InterPro:IPR013087	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR10593	PANTHER:PTHR10593:SF41	SMART:SM00355	SUPFAM:SSF57667	EnsemblPlantsGene:TraesCS1D01G061200	EnsemblPlants:TraesCS1D01G061200.1
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:-:41565374..41566537

Molecular Weight (calculated)

41537.0 Da

IEP (calculated)

8.434

GRAVY (calculated)

-0.356

Length

387 amino acids

Sequence
(BLAST)

001: MFPDAGASPY FLQNQQQLFH GINGIGADAA FAGDGGLAVP VPDTHRSALL YNLSVLKDKV QQLEPLVGLA VGRGHGHVVD PVLPGASAVV QEIITVATSM
101: LYALQHPYGL SALTTSGYDA ATREGVVDGH AKNGAADDDQ EAMVDAMRQW QQQHHGGGHD IPGNSAEAAA VSSPTQATTA SAVDTTIIEL DAAELLAKYT
201: HYCQVCGKGF KRDANLRMHM RAHGDEYKSK AALANPTTRL FATSGEDAAD AAGRSRNSKY SCPHDGCRWN RRHAKFQPLK SVICVKNHYK RSHCPKMYVC
301: NRCNRKHFSV LSDLRTHEKH CGDHRWICSC GTTFSRKDKL AGHVSLFAGH QPVAPLAAGR HGKRSSLLST SSSDLVGNCA TTGFSIT

Best Arabidopsis Sequence Match ( AT5G22890.1 )
(BLAST)

001: MHIHMMNRDE HIAKKVEGSI SSFSGETSTS SKQIYVNPVT TTGTKSMEDD DVSLSLLYNL STLHEKVHQI QSLVSFYMVS TNNINQSSGS TSLAVANIGS
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK

Arabidopsis Description

STOP2Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WT24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.