Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G147400.1 | Wheat | nucleus | 97.12 | 96.65 |
| Os09t0485600-01 | Rice | cytosol, mitochondrion, nucleus | 32.21 | 87.01 |
| TraesCS5D01G270700.1 | Wheat | nucleus | 62.5 | 63.41 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 46.39 | 52.16 |
| TraesCS5D01G179700.1 | Wheat | nucleus | 37.5 | 50.65 |
| TraesCS3D01G364800.1 | Wheat | nucleus | 34.86 | 39.51 |
| TraesCS5D01G184400.1 | Wheat | nucleus | 32.45 | 38.03 |
| TraesCS1D01G276200.1 | Wheat | nucleus, plastid | 32.45 | 36.78 |
| TraesCS3D01G054300.1 | Wheat | nucleus | 14.42 | 22.3 |
| TraesCS1D01G061200.1 | Wheat | nucleus | 18.75 | 20.16 |
| TraesCS5D01G519100.1 | Wheat | nucleus | 19.71 | 19.9 |
| TraesCS6D01G188100.1 | Wheat | nucleus | 16.35 | 18.43 |
| TraesCS3D01G375000.1 | Wheat | nucleus | 18.27 | 14.62 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G242600.1 | EnsemblPlantsGene:TraesCS7D01G242600 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF68 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr7D:-:208223012..208225435
Molecular Weight (calculated)
45494.0 Da
IEP (calculated)
6.612
GRAVY (calculated)
-0.602
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDPYTSFLK NPYYYYCTSS FPTAPPTPHL PPPFQPYAAL YPAVAAAAAP HHQYPSFFQH QPAQPTHHYS TAPPSPPLRE ALPLLSLSPT PAARPRAVQH
101: HDAADSDSDD DNNDCCYHLR QEVAAGSRTT SARTPLFADL NCVPSCCDDG DGDPMDVEAS WSTSTDDAAV ALRIGLPAAE ADLLSGLSGR AAEEDEEEED
201: DCKPGGGHEE VPLGFSSTAP IGRLNKGQYW IPTPSQILIG PTQFSCPVCF KTFNRYNNMQ MHMWGHGSQY RKGPESLRGV QPTAMLRLPC YCCAAGCRNN
301: IDHPRAKPLK DFRTLQTHYK RKHGLKPFLC RRCGKAFAVK GDWRTHEKNC GKLWYCLCGS EFKHKRSLKD HARAFGHGHG AFGCNGAAGG DGSFDDDDEG
401: AVSEIEHDVV CGAAAR
101: HDAADSDSDD DNNDCCYHLR QEVAAGSRTT SARTPLFADL NCVPSCCDDG DGDPMDVEAS WSTSTDDAAV ALRIGLPAAE ADLLSGLSGR AAEEDEEEED
201: DCKPGGGHEE VPLGFSSTAP IGRLNKGQYW IPTPSQILIG PTQFSCPVCF KTFNRYNNMQ MHMWGHGSQY RKGPESLRGV QPTAMLRLPC YCCAAGCRNN
301: IDHPRAKPLK DFRTLQTHYK RKHGLKPFLC RRCGKAFAVK GDWRTHEKNC GKLWYCLCGS EFKHKRSLKD HARAFGHGHG AFGCNGAAGG DGSFDDDDEG
401: AVSEIEHDVV CGAAAR
001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
Arabidopsis Description
WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.