Factsheet for TraesCS5D01G184400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G177600.1	Wheat	nucleus, plastid	87.04	97.78
TraesCS5A01G179800.1	Wheat	nucleus	97.75	97.75
EER96535	Sorghum	nucleus	76.62	73.51
Zm00001d020037_P001	Maize	nucleus	77.46	73.14
Os09t0307400-00	Rice	nucleus	74.93	67.51
PGSC0003DMT400096573	Potato	cytosol, mitochondrion, nucleus, peroxisome	29.01	67.32
Zm00001d005566_P001	Maize	nucleus	69.3	64.91
GSMUA_Achr6P01410_001	Banana	nucleus	48.17	60.85
VIT_01s0011g03100.t01	Wine grape	nucleus	44.23	57.09
KRH34760	Soybean	nucleus	41.41	53.85
Solyc05g009770.1.1	Tomato	nucleus	42.54	52.8
KRG92027	Soybean	nucleus	40.0	51.82
AT1G13290.1	Thale cress	nucleus	43.66	51.32
CDY19385	Canola	nucleus	43.1	50.33
Bra019822.1-P	Field mustard	nucleus	43.38	50.0
CDX97995	Canola	nucleus	43.38	50.0
KRH75477	Soybean	nucleus	46.2	49.4
KRH70598	Soybean	nucleus	45.35	48.2
CDY26642	Canola	nucleus	39.72	47.64
GSMUA_Achr5P09960_001	Banana	endoplasmic reticulum, nucleus, plastid	55.21	45.48
TraesCS1D01G276200.1	Wheat	nucleus, plastid	42.82	41.42
TraesCS5D01G179700.1	Wheat	nucleus	33.8	38.96
TraesCS7D01G397800.1	Wheat	nucleus	38.59	37.03
TraesCS3D01G364800.1	Wheat	nucleus	37.18	35.97
TraesCS5D01G270700.1	Wheat	nucleus	37.75	32.68
TraesCS7D01G242600.1	Wheat	nucleus	38.03	32.45
TraesCS3D01G054300.1	Wheat	nucleus	16.34	21.56
TraesCS6D01G188100.1	Wheat	nucleus	19.15	18.43
TraesCS1D01G061200.1	Wheat	nucleus	19.15	17.57
TraesCS5D01G519100.1	Wheat	nucleus	19.72	16.99
TraesCS3D01G375000.1	Wheat	nucleus	19.44	13.27

Protein Annotations

EnsemblPlants:TraesCS5D01G184400.1	EnsemblPlantsGene:TraesCS5D01G184400	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF52	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	MapMan:15.5.15	:

Description

No Description!

Coordinates

chr5D:-:285839402..285840577

Molecular Weight (calculated)

38050.3 Da

IEP (calculated)

7.259

GRAVY (calculated)

-0.530

Length

355 amino acids

Sequence
(BLAST)

001: MHSYRAMHPH PHPYHTAPAP PPKMASGGHG GGTEDDDQSM LLLSLWPPGH HHDVAASSSA CSSHSVATAA HSTASSPWFN PSHVYHGCGV GGGGGSSGSF
101: LFHEQDPNVS VSLSIAPPSP CGANLAPCGG SFAAPVAPPS AATAGGIGNQ VPSQYWIPSA AEILVGSTQF SCAVCNKTFN RFNNMQMHMW GHGSQYRKGS
201: ESLRGAVTVG TAAPPPSLMR LPCYCCAEGC RNNIDHPRAR PLKDFRTLQT HYRRKHGARP YACRRCGKRF AVRGDWRTHE KNCGKLWFCV CGSDFKHKRS
301: LKDHVRSFGG GHAPHIIESV AVDEDEDEDD EHDDGDLHLY DENGNAGDGS DMVLL

Best Arabidopsis Sequence Match ( AT1G08290.1 )
(BLAST)

001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE

Arabidopsis Description

WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.