Factsheet for PGSC0003DMT400096573

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017556	Potato	nucleus	69.28	74.13
Solyc05g009770.1.1	Tomato	nucleus	91.5	48.95
VIT_01s0011g03100.t01	Wine grape	nucleus	77.12	42.91
GSMUA_Achr6P21380_001	Banana	nucleus	66.01	42.62
KRH34760	Soybean	nucleus	73.86	41.39
KRG92027	Soybean	nucleus	70.59	39.42
AT1G13290.1	Thale cress	nucleus	75.16	38.08
GSMUA_Achr6P01410_001	Banana	nucleus	68.63	37.37
CDY19385	Canola	nucleus	73.2	36.84
Bra019822.1-P	Field mustard	nucleus	73.86	36.69
CDX97995	Canola	nucleus	73.86	36.69
KRH70598	Soybean	nucleus	77.78	35.63
KRH75477	Soybean	nucleus	77.12	35.54
CDY26642	Canola	nucleus	67.97	35.14
PGSC0003DMT400077822	Potato	nucleus	69.28	33.33
TraesCS5B01G177600.1	Wheat	nucleus, plastid	67.32	32.59
PGSC0003DMT400018308	Potato	nucleus, plastid	69.28	32.52
PGSC0003DMT400035408	Potato	nucleus	68.63	30.26
TraesCS5D01G184400.1	Wheat	nucleus	67.32	29.01
TraesCS5A01G179800.1	Wheat	nucleus	67.32	29.01
Zm00001d020037_P001	Maize	nucleus	69.93	28.46
EER96535	Sorghum	nucleus	67.97	28.11
Zm00001d005566_P001	Maize	nucleus	68.63	27.7
Os09t0307400-00	Rice	nucleus	67.32	26.14
GSMUA_Achr5P09960_001	Banana	endoplasmic reticulum, nucleus, plastid	70.59	25.06
PGSC0003DMT400079144	Potato	nucleus	62.75	20.13
PGSC0003DMT400001105	Potato	nucleus	32.68	15.72
PGSC0003DMT400008898	Potato	extracellular, nucleus	31.37	13.04
PGSC0003DMT400067092	Potato	nucleus	33.33	11.78
PGSC0003DMT400023881	Potato	nucleus	33.99	10.14

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150
GO:GO:0009653	GO:GO:0009790	GO:GO:0009791	GO:GO:0010087	GO:GO:0010305	GO:GO:0010588
GO:GO:0048364	GO:GO:0048367	InterPro:IPR013087	UniProt:M1DYR7	EnsemblPlantsGene:PGSC0003DMG400046144	PGSC:PGSC0003DMG400046144
EnsemblPlants:PGSC0003DMT400096573	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF52	SUPFAM:SSF57667	UniParc:UPI0002968F82
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

Zinc finger family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400046144]

Coordinates

chr5:-:2055919..2056953

Molecular Weight (calculated)

17780.9 Da

IEP (calculated)

7.982

GRAVY (calculated)

-1.158

Length

153 amino acids

Sequence
(BLAST)

001: MQMHMWGHGS QYRKGPDSLK GTKQASSMLR LPCYCCAEGC KNSIDHPRSK PLKDFRTLQT HYKRKHGAKP FNCRKCGKNF AVRGDWRTHE KNCGKIWFCI
101: CGSDFKHKRS LKDHVKAFGD GHAPHSENSY YHVEGDEDEE EEDDNDEIME MEL

Best Arabidopsis Sequence Match ( AT1G13290.1 )
(BLAST)

001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY

Arabidopsis Description

WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.