Factsheet for TraesCS5B01G177600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G184400.1	Wheat	nucleus	97.78	87.04
TraesCS5A01G179800.1	Wheat	nucleus	97.15	86.48
PGSC0003DMT400096573	Potato	cytosol, mitochondrion, nucleus, peroxisome	32.59	67.32
EER96535	Sorghum	nucleus	77.22	65.95
TraesCS5B01G172600.1	Wheat	mitochondrion	28.48	65.69
Zm00001d020037_P001	Maize	nucleus	78.16	65.69
Os09t0307400-00	Rice	nucleus	75.95	60.91
GSMUA_Achr6P01410_001	Banana	nucleus	53.16	59.79
Zm00001d005566_P001	Maize	nucleus	70.57	58.84
VIT_01s0011g03100.t01	Wine grape	nucleus	48.73	56.0
KRH34760	Soybean	nucleus	45.57	52.75
Solyc05g009770.1.1	Tomato	nucleus	46.84	51.75
KRG92027	Soybean	nucleus	44.3	51.09
AT1G13290.1	Thale cress	nucleus	48.1	50.33
CDY19385	Canola	nucleus	47.47	49.34
Bra019822.1-P	Field mustard	nucleus	47.78	49.03
CDX97995	Canola	nucleus	47.78	49.03
CDY26642	Canola	nucleus	44.3	47.3
KRH75477	Soybean	nucleus	49.37	46.99
KRH70598	Soybean	nucleus	48.42	45.81
GSMUA_Achr5P09960_001	Banana	endoplasmic reticulum, nucleus, plastid	58.23	42.69
TraesCS1B01G285900.1	Wheat	nucleus, plastid	45.25	38.65
TraesCS7B01G304000.1	Wheat	nucleus	42.72	36.49
TraesCS3B01G404000.1	Wheat	nucleus	40.82	34.68
TraesCS5B01G262400.1	Wheat	nucleus	41.46	32.11
TraesCS7B01G147400.1	Wheat	nucleus	42.09	31.82
TraesCS6B01G227100.1	Wheat	nucleus	21.2	18.06
TraesCS5B01G519700.1	Wheat	nucleus	22.15	16.87
TraesCS1B01G078700.1	Wheat	nucleus	20.89	16.84
TraesCS3B01G414500.1	Wheat	nucleus	22.47	13.65

Protein Annotations

EnsemblPlants:TraesCS5B01G177600.1	EnsemblPlantsGene:TraesCS5B01G177600	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF52	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	MapMan:15.5.15	:

Description

No Description!

Coordinates

chr5B:-:324248303..324249369

Molecular Weight (calculated)

34026.6 Da

IEP (calculated)

7.409

GRAVY (calculated)

-0.483

Length

316 amino acids

Sequence
(BLAST)

001: MLLLSLWPPG HHHDAAASSS ACSSHSVATA AHSTASSPWF NPSHVYHGCG VGGGGGSNGS FLFHEQDPNV SVSLSIAPPS PCGANLAPCG GSYAYAAPVA
101: PPSAATAGGN QVPSQYWIPS AAEILVGSTQ FSCAVCNKTF NRFNNMQMHM WGHGSQYRKG SESLRGAVTV GTAAPPPSLM RLPCYCCAEG CRNNIDHPRA
201: RPLKDFRTLQ THYRRKHGAR PYACRRCGKR FAVRGDWRTH EKNCGKLWFC VCGSDFKHKR SLKDHVRSFG GGHAPHIIES VAVDEDEDED DEHDDGDLHL
301: YDENGNPGDG TDMVLL

Best Arabidopsis Sequence Match ( AT1G13290.1 )
(BLAST)

001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY

Arabidopsis Description

WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.