Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G397800.1 | Wheat | nucleus | 97.84 | 97.84 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 97.03 | 97.55 |
| PGSC0003DMT400017556 | Potato | nucleus | 29.73 | 76.92 |
| TraesCS5B01G172600.1 | Wheat | mitochondrion | 28.11 | 75.91 |
| EER88644 | Sorghum | nucleus, plastid | 75.68 | 69.31 |
| Zm00001d046774_P001 | Maize | nucleus | 72.97 | 67.84 |
| Zm00001d036812_P001 | Maize | nucleus | 70.81 | 67.35 |
| CDY57608 | Canola | nucleus | 42.7 | 65.83 |
| Bra003295.1-P | Field mustard | nucleus | 43.24 | 65.04 |
| CDX67704 | Canola | nucleus | 43.24 | 65.04 |
| Solyc11g062060.1.1 | Tomato | nucleus | 44.86 | 63.6 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 73.24 | 60.9 |
| Bra007346.1-P | Field mustard | nucleus | 49.73 | 59.93 |
| GSMUA_Achr3P11870_001 | Banana | nucleus | 54.32 | 59.12 |
| PGSC0003DMT400077822 | Potato | nucleus | 50.54 | 58.8 |
| Solyc01g087050.2.1 | Tomato | nucleus | 47.3 | 58.72 |
| VIT_08s0007g08070.t01 | Wine grape | nucleus | 54.59 | 58.55 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 52.7 | 58.38 |
| KRG95308 | Soybean | nucleus, plastid | 53.78 | 57.02 |
| CDX88959 | Canola | nucleus | 55.68 | 56.59 |
| CDX72006 | Canola | nucleus | 57.03 | 56.57 |
| CDY06083 | Canola | nucleus | 57.03 | 56.42 |
| Bra014612.1-P | Field mustard | nucleus, plastid | 55.41 | 56.32 |
| KRH66988 | Soybean | nucleus | 53.78 | 55.59 |
| PGSC0003DMT400035408 | Potato | nucleus | 51.62 | 55.04 |
| VIT_13s0064g01060.t01 | Wine grape | nucleus | 50.54 | 54.52 |
| AT3G57670.1 | Thale cress | nucleus | 55.95 | 54.05 |
| KRH24697 | Soybean | nucleus, plastid | 49.73 | 53.96 |
| KRH29701 | Soybean | nucleus | 49.46 | 53.67 |
| KRH71956 | Soybean | nucleus, plastid | 53.78 | 53.64 |
| KRH10191 | Soybean | nucleus, plastid | 49.73 | 53.33 |
| CDY06390 | Canola | nucleus | 48.11 | 53.29 |
| KRH23146 | Soybean | nucleus, plastid | 49.73 | 52.57 |
| AT1G51220.1 | Thale cress | nucleus | 47.84 | 52.52 |
| Bra030450.1-P | Field mustard | nucleus | 47.84 | 52.06 |
| CDY29624 | Canola | nucleus | 47.57 | 51.76 |
| KRH27491 | Soybean | nucleus, plastid | 49.19 | 51.7 |
| CDY35565 | Canola | nucleus | 47.03 | 51.33 |
| KRH33045 | Soybean | nucleus, plastid | 53.51 | 51.3 |
| KRH20837 | Soybean | nucleus, plastid | 49.46 | 51.26 |
| CDY22834 | Canola | nucleus, plastid | 46.76 | 51.18 |
| CDY25224 | Canola | nucleus | 46.22 | 50.59 |
| CDY27556 | Canola | nucleus | 48.92 | 50.56 |
| Bra018902.1-P | Field mustard | plastid | 45.95 | 50.45 |
| CDY57920 | Canola | nucleus | 48.92 | 50.42 |
| Bra023918.1-P | Field mustard | nucleus | 48.92 | 50.42 |
| KRH43510 | Soybean | nucleus, plastid | 46.76 | 50.0 |
| Bra031239.1-P | Field mustard | nucleus | 48.38 | 49.86 |
| KRH13927 | Soybean | nucleus, plastid | 45.14 | 48.83 |
| TraesCS5B01G262400.1 | Wheat | nucleus | 53.78 | 48.77 |
| TraesCS7B01G147400.1 | Wheat | nucleus | 52.43 | 46.41 |
| AT3G20880.1 | Thale cress | nucleus | 48.11 | 43.2 |
| Solyc03g059270.2.1 | Tomato | nucleus | 39.73 | 42.98 |
| TraesCS5B01G177600.1 | Wheat | nucleus, plastid | 36.49 | 42.72 |
| TraesCS3B01G404000.1 | Wheat | nucleus | 40.81 | 40.59 |
| TraesCS1B01G285900.1 | Wheat | nucleus, plastid | 35.68 | 35.68 |
| TraesCS5B01G519700.1 | Wheat | nucleus | 22.16 | 19.76 |
| TraesCS6B01G227100.1 | Wheat | nucleus | 19.19 | 19.14 |
| TraesCS1B01G078700.1 | Wheat | nucleus | 19.73 | 18.62 |
| TraesCS3B01G414500.1 | Wheat | nucleus | 19.46 | 13.85 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G304000.1 | EnsemblPlantsGene:TraesCS7B01G304000 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF61 | PFAM:PF00096 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 |
Description
No Description!
Coordinates
chr7B:-:544480547..544482803
Molecular Weight (calculated)
40410.9 Da
IEP (calculated)
7.549
GRAVY (calculated)
-0.748
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDPYTNFLR GYSFRYSNAA ASSSSPFPSY TSNLHHPPPS SPPIREALPL LSLTPSSSTC HNPHQHHDQE DHKVITTASC SSQAEAADQA AGEVTVALHI
101: GLPSPSPSDA AAGSGDHHQE AAAAGGVAAE ERSQQQQEEG QEEGEGEEED GSTMALGVGC ASLGIGRLTK GQYWIPTPSQ ILIGPTQFSC PVCYKTFNRY
201: NNMQMHMWGH GSQYRKGPES LRGTQPTAML RLPCYCCAAG CRNNVDHPRA RPLKDFRTLQ THYKRKHGIK PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC
301: ACGSDFKHKR SLKDHIRAFG RGHAPCGIDC FDLDDDDRDP SSEVDHTVNT AAAATTTNSA GSDRRHWKAN
101: GLPSPSPSDA AAGSGDHHQE AAAAGGVAAE ERSQQQQEEG QEEGEGEEED GSTMALGVGC ASLGIGRLTK GQYWIPTPSQ ILIGPTQFSC PVCYKTFNRY
201: NNMQMHMWGH GSQYRKGPES LRGTQPTAML RLPCYCCAAG CRNNVDHPRA RPLKDFRTLQ THYKRKHGIK PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC
301: ACGSDFKHKR SLKDHIRAFG RGHAPCGIDC FDLDDDDRDP SSEVDHTVNT AAAATTTNSA GSDRRHWKAN
001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
Arabidopsis Description
WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.