Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06390 | Canola | nucleus | 85.79 | 92.22 |
| Bra023918.1-P | Field mustard | nucleus | 86.35 | 86.35 |
| Bra018902.1-P | Field mustard | plastid | 67.97 | 72.4 |
| Bra030450.1-P | Field mustard | nucleus | 68.52 | 72.35 |
| AT3G20880.1 | Thale cress | nucleus | 80.22 | 69.9 |
| Bra003295.1-P | Field mustard | nucleus | 43.45 | 63.41 |
| Solyc11g062060.1.1 | Tomato | nucleus | 45.13 | 62.07 |
| GSMUA_Achr9P12600_001 | Banana | nucleus | 50.97 | 58.84 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 52.09 | 55.99 |
| GSMUA_Achr3P03850_001 | Banana | plastid | 50.14 | 55.73 |
| Bra007346.1-P | Field mustard | nucleus | 47.08 | 55.05 |
| PGSC0003DMT400035408 | Potato | nucleus | 52.65 | 54.47 |
| GSMUA_Achr4P01560_001 | Banana | nucleus | 48.19 | 53.73 |
| GSMUA_Achr6P03470_001 | Banana | nucleus | 47.35 | 53.29 |
| Bra014612.1-P | Field mustard | nucleus, plastid | 53.76 | 53.02 |
| GSMUA_AchrUn_... | Banana | plastid | 48.19 | 52.91 |
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 44.01 | 52.67 |
| KRH10191 | Soybean | nucleus, plastid | 49.58 | 51.59 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.75 | 50.87 |
| GSMUA_Achr3P11050_001 | Banana | cytosol, nucleus, plastid | 48.19 | 50.73 |
| KRH23146 | Soybean | nucleus, plastid | 48.47 | 49.71 |
| KRH29701 | Soybean | nucleus | 46.52 | 48.97 |
| KRH24697 | Soybean | nucleus, plastid | 46.52 | 48.97 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 50.14 | 48.91 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 50.14 | 48.65 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 49.86 | 48.38 |
| Bra019822.1-P | Field mustard | nucleus | 40.67 | 47.4 |
| Bra028067.1-P | Field mustard | nucleus | 37.88 | 47.39 |
| Zm00001d036812_P001 | Maize | nucleus | 49.86 | 46.02 |
| EER88644 | Sorghum | nucleus, plastid | 50.42 | 44.8 |
| Zm00001d046774_P001 | Maize | nucleus | 49.58 | 44.72 |
| Bra018638.1-P | Field mustard | nucleus | 41.23 | 43.92 |
| Bra031621.1-P | Field mustard | nucleus | 38.72 | 41.25 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 50.7 | 40.9 |
| Bra002438.1-P | Field mustard | nucleus | 20.61 | 19.68 |
| Bra040971.1-P | Field mustard | nucleus | 21.73 | 18.31 |
| Bra036750.1-P | Field mustard | nucleus | 21.45 | 15.68 |
| Bra020223.1-P | Field mustard | nucleus | 11.42 | 13.8 |
| Bra020224.1-P | Field mustard | nucleus | 11.14 | 13.29 |
| Bra002437.1-P | Field mustard | nucleus | 5.85 | 8.43 |
Protein Annotations
| EnsemblPlants:Bra031239.1 | EnsemblPlants:Bra031239.1-P | EnsemblPlantsGene:Bra031239 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF61 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI00025479F2 | UniProt:M4ER16 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
AT3G20880 (E=8e-164) | zinc finger (C2H2 type) protein (WIP4)
Coordinates
chrA05:+:16756246..16758312
Molecular Weight (calculated)
40618.1 Da
IEP (calculated)
6.853
GRAVY (calculated)
-0.839
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDPACIFNN GVVDGYDYSF NYSTSLSHIY NSNGSFYYPR NTTDINPNST LPESPPLREA LPLLSLSPIH KQKEDIVPQH EYYFMETTEN SSNSNFLNHN
101: LDQCQESTHH YDVTVDLHLG LPNPGGDAIG YGGGGSSSSD VILDSTDQEH HQDRHQYHGV EVTLASDHHH DGHGGVQRGI HNHYWIPTPS QILMGPTQFS
201: CPLCYKTFNR YNNMQMHMWG HGSEYRKGPE SLRGTQPTGM LKLPCYCCAP GCKNNIEHPR ARPLKDFRTL QTHYKRKHGA RPFACRRCGK AFAVKGDWRT
301: HEKNCGRLWY CSCGSDFKHK RSLKDHVKAF GNGHVPCFGI DCFGDHEDEE AASDVEQQE
101: LDQCQESTHH YDVTVDLHLG LPNPGGDAIG YGGGGSSSSD VILDSTDQEH HQDRHQYHGV EVTLASDHHH DGHGGVQRGI HNHYWIPTPS QILMGPTQFS
201: CPLCYKTFNR YNNMQMHMWG HGSEYRKGPE SLRGTQPTGM LKLPCYCCAP GCKNNIEHPR ARPLKDFRTL QTHYKRKHGA RPFACRRCGK AFAVKGDWRT
301: HEKNCGRLWY CSCGSDFKHK RSLKDHVKAF GNGHVPCFGI DCFGDHEDEE AASDVEQQE
001: MLFSTVLSHR TLYILTCPNT LIHSYTHPHI HAYLAFTGFL TQLHHLEISC LLLLFFSLSS LLKLMADPDC IFRNGYVDYY NYSFNYATSL SRIYNSHDSF
101: YYPHQTTNPN INENPNLTSP DSPPLREALP LLSLSPIHKH QEPTANHHEY YFMETTETSS NSNFLDQCQD SYRHDVTVDL HLGLPNLGDG GSSSSDVVLD
201: STDHQEGHHD HHQDQGLEVT MASDHDDEHG GLQRGNHLHH FWIPTPSQIL MGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLKL
301: PCYCCAPGCK NNIDHPRARP LKDFRTLQTH YKRKHGVRPF ACRRCGKAFA VKGDWRTHEK NCGKLWYCSC GSDFKHKRSL KDHVKAFGNG HVPCCGIDHE
401: EEEAASDVEQ QE
101: YYPHQTTNPN INENPNLTSP DSPPLREALP LLSLSPIHKH QEPTANHHEY YFMETTETSS NSNFLDQCQD SYRHDVTVDL HLGLPNLGDG GSSSSDVVLD
201: STDHQEGHHD HHQDQGLEVT MASDHDDEHG GLQRGNHLHH FWIPTPSQIL MGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLKL
301: PCYCCAPGCK NNIDHPRARP LKDFRTLQTH YKRKHGVRPF ACRRCGKAFA VKGDWRTHEK NCGKLWYCSC GSDFKHKRSL KDHVKAFGNG HVPCCGIDHE
401: EEEAASDVEQ QE
Arabidopsis Description
WIP4Zinc finger protein WIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W030]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.