Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P03850_001 | Banana | plastid | 81.37 | 81.11 |
| GSMUA_Achr9P12600_001 | Banana | nucleus | 68.63 | 71.06 |
| GSMUA_AchrUn_... | Banana | nucleus | 68.94 | 64.53 |
| Solyc11g062060.1.1 | Tomato | nucleus | 51.86 | 63.98 |
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 59.32 | 63.67 |
| GSMUA_Achr6P03470_001 | Banana | nucleus | 63.04 | 63.64 |
| GSMUA_AchrUn_... | Banana | plastid | 63.66 | 62.69 |
| GSMUA_AchrUn_... | Banana | nucleus | 62.73 | 61.77 |
| GSMUA_Achr3P11050_001 | Banana | cytosol, nucleus, plastid | 64.6 | 61.0 |
| GSMUA_Achr3P11870_001 | Banana | nucleus | 64.29 | 60.88 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 61.49 | 59.28 |
| GSMUA_Achr11P... | Banana | nucleus | 40.37 | 58.04 |
| PGSC0003DMT400035408 | Potato | nucleus | 59.63 | 55.33 |
| GSMUA_Achr4P06350_001 | Banana | nucleus | 53.11 | 55.16 |
| KRH10191 | Soybean | nucleus, plastid | 59.01 | 55.07 |
| GSMUA_Achr9P22340_001 | Banana | nucleus | 62.11 | 54.79 |
| KRH23146 | Soybean | nucleus, plastid | 58.39 | 53.71 |
| GSMUA_Achr6P21380_001 | Banana | nucleus | 39.13 | 53.16 |
| AT1G51220.1 | Thale cress | nucleus | 55.59 | 53.12 |
| KRH29701 | Soybean | nucleus | 55.9 | 52.79 |
| KRH24697 | Soybean | nucleus, plastid | 55.9 | 52.79 |
| CDY25224 | Canola | nucleus | 55.28 | 52.66 |
| CDY22834 | Canola | nucleus, plastid | 54.97 | 52.37 |
| CDY35565 | Canola | nucleus | 54.97 | 52.21 |
| Bra030450.1-P | Field mustard | nucleus | 54.97 | 52.06 |
| Bra018902.1-P | Field mustard | plastid | 54.35 | 51.93 |
| CDY29624 | Canola | nucleus | 54.35 | 51.47 |
| CDY06390 | Canola | nucleus | 53.11 | 51.2 |
| GSMUA_Achr1P16530_001 | Banana | nucleus | 57.14 | 50.97 |
| GSMUA_Achr5P26210_001 | Banana | nucleus | 42.24 | 48.75 |
| CDY57920 | Canola | nucleus | 53.73 | 48.19 |
| Bra023918.1-P | Field mustard | nucleus | 53.73 | 48.19 |
| Bra031239.1-P | Field mustard | nucleus | 53.73 | 48.19 |
| GSMUA_Achr6P01410_001 | Banana | nucleus | 41.93 | 48.04 |
| CDY27556 | Canola | nucleus | 52.8 | 47.49 |
| AT3G20880.1 | Thale cress | nucleus | 52.8 | 41.26 |
| GSMUA_Achr5P09960_001 | Banana | endoplasmic reticulum, nucleus, plastid | 42.86 | 32.02 |
| GSMUA_Achr1P15330_001 | Banana | cytosol | 19.25 | 22.06 |
| GSMUA_Achr11P... | Banana | nucleus | 20.19 | 19.12 |
| GSMUA_Achr10P... | Banana | nucleus | 22.67 | 18.34 |
| GSMUA_Achr10P... | Banana | nucleus | 19.57 | 17.95 |
| GSMUA_Achr5P01170_001 | Banana | nucleus | 21.12 | 17.3 |
| GSMUA_Achr6P18840_001 | Banana | nucleus | 20.81 | 16.22 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P01560_001 | EnsemblPlants:GSMUA_Achr4T01560_001 | EnsemblPlantsGene:GSMUA_Achr4G01560_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF98 |
| PFAM:PF00096 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI00029581EE | UniProt:M0SK73 | MapMan:15.5.15 | : | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G01560_001]
Coordinates
chr4:-:1296874..1298772
Molecular Weight (calculated)
36377.1 Da
IEP (calculated)
8.007
GRAVY (calculated)
-0.698
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MANPYTKFFK LYNHCPFLSD PSSTPTATQS YSFSPHCYSN SFPRQLPSSP LKEALPLLSL CATRHQEEEE EEEEEGTSCD ASIGGGKKKA VRVDDEAADE
101: VDAVTVALHI GLPSPVDDVV TLGYASGNHP LGRLNKGQYW IPTPSQILIG PTQFSCPVCY KTFNRYNNMQ MHMWGHGSQY RKGPESLRGI QPTAMLRLPC
201: YCCAPGCRNN IDHPRSKPLK DFRTLQAHYK RKHGIKPFMC RKCGKAFAVK GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIKSFGQGHA AYGINWFENE
301: DDPSSEIEHD CHQPKELEKL TC
101: VDAVTVALHI GLPSPVDDVV TLGYASGNHP LGRLNKGQYW IPTPSQILIG PTQFSCPVCY KTFNRYNNMQ MHMWGHGSQY RKGPESLRGI QPTAMLRLPC
201: YCCAPGCRNN IDHPRSKPLK DFRTLQAHYK RKHGIKPFMC RKCGKAFAVK GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIKSFGQGHA AYGINWFENE
301: DDPSSEIEHD CHQPKELEKL TC
001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
Arabidopsis Description
WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.