Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017556 | Potato | nucleus | 26.45 | 57.34 |
| GSMUA_Achr3P03850_001 | Banana | plastid | 59.68 | 57.28 |
| GSMUA_Achr9P12600_001 | Banana | nucleus | 57.1 | 56.91 |
| GSMUA_AchrUn_... | Banana | plastid | 60.0 | 56.88 |
| GSMUA_AchrUn_... | Banana | nucleus | 57.1 | 54.13 |
| GSMUA_Achr9P22340_001 | Banana | nucleus | 62.9 | 53.42 |
| GSMUA_Achr4P01560_001 | Banana | nucleus | 55.16 | 53.11 |
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 50.97 | 52.67 |
| GSMUA_Achr3P11870_001 | Banana | nucleus | 57.42 | 52.35 |
| GSMUA_Achr6P03470_001 | Banana | nucleus | 52.26 | 50.78 |
| GSMUA_Achr3P11050_001 | Banana | cytosol, nucleus, plastid | 55.81 | 50.73 |
| GSMUA_AchrUn_... | Banana | nucleus | 55.81 | 50.29 |
| Solyc01g087050.2.1 | Tomato | nucleus | 47.42 | 49.33 |
| VIT_13s0064g01060.t01 | Wine grape | nucleus | 53.87 | 48.69 |
| GSMUA_Achr1P16530_001 | Banana | nucleus | 55.16 | 47.37 |
| GSMUA_Achr11P... | Banana | nucleus | 33.23 | 45.98 |
| KRH27491 | Soybean | nucleus, plastid | 50.65 | 44.6 |
| KRH43510 | Soybean | nucleus, plastid | 49.35 | 44.22 |
| GSMUA_Achr6P21380_001 | Banana | nucleus | 33.55 | 43.88 |
| KRH13927 | Soybean | nucleus, plastid | 48.06 | 43.57 |
| KRH20837 | Soybean | nucleus, plastid | 49.68 | 43.14 |
| GSMUA_Achr5P26210_001 | Banana | nucleus | 37.74 | 41.94 |
| GSMUA_Achr6P01410_001 | Banana | nucleus | 34.84 | 38.43 |
| GSMUA_Achr5P09960_001 | Banana | endoplasmic reticulum, nucleus, plastid | 37.1 | 26.68 |
| GSMUA_Achr1P15330_001 | Banana | cytosol | 17.74 | 19.57 |
| GSMUA_Achr11P... | Banana | nucleus | 18.71 | 17.06 |
| GSMUA_Achr10P... | Banana | nucleus | 17.74 | 15.67 |
| GSMUA_Achr10P... | Banana | nucleus | 20.0 | 15.58 |
| GSMUA_Achr5P01170_001 | Banana | nucleus | 18.06 | 14.25 |
| GSMUA_Achr6P18840_001 | Banana | nucleus | 17.74 | 13.32 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P06350_001 | EnsemblPlants:GSMUA_Achr4T06350_001 | EnsemblPlantsGene:GSMUA_Achr4G06350_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF98 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI0002950B5A | UniProt:M0SLK2 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G06350_001]
Coordinates
chr4:-:4801406..4802785
Molecular Weight (calculated)
34599.3 Da
IEP (calculated)
6.448
GRAVY (calculated)
-0.726
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPYHNFLE GCFNHHPFSC NLSPPPPPPP PFSTYNFYSN YINYNTTHLY SPPPPSPPLR EALPLLSLSP TDLHQHEEET ACSASPSVDY GGNSSKKCFN
101: DGENGEDEAV MVALRIGLPS PSTADVCSGV SPASADDEKE LEEDGGGDAA PLCYPIVGRL TKGQYWIPTP SQILLGPTQF SCLVCCKTFN RYNNMQMHMN
201: NIDHPRSKPL KDFRTLQTHY RRKHGVKPFA CRKCGKALAV RGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIKAFGQGH AACGIDCFDE EDEPSSEIEQ
301: DSDHSRHELH
101: DGENGEDEAV MVALRIGLPS PSTADVCSGV SPASADDEKE LEEDGGGDAA PLCYPIVGRL TKGQYWIPTP SQILLGPTQF SCLVCCKTFN RYNNMQMHMN
201: NIDHPRSKPL KDFRTLQTHY RRKHGVKPFA CRKCGKALAV RGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIKAFGQGH AACGIDCFDE EDEPSSEIEQ
301: DSDHSRHELH
001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
Arabidopsis Description
WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.